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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattaaaaataaccatccatttatttttctgaagcagggtcaagacctatagagagaactgaaattggttttggaaatttcagGATGGAAAGCATTTCCATAAAACGTGTGCATGGATTGGCCAAGATTTTGGGGTCCGTTCTAAGCCTTGCTGGGGCAATAACATTTGCTTTAGTTAAAGGA

Basic information

species Glycine max
transcript GLYMA16G28210.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192318964|gb|FK009044.1|FK009044
EST:     GCCACAAATACTGTCCCTGCCATTACTTTCATCATGGCTGTTTTAATTAG                         GATGGAAAGCATTTCCATAAAACGTGTGCATGGATTGGCCAAGATTTTGGG
genomic: GCCACAAATACTGTCCCTGCCATTACTTTCATCATGGCTGTTTTAATTAGgtaaaattaa ... gaaatttcagGATGGAAAGCATTTCCATAAAACGTGTGCATGGATTGGCCAAGATTTTGGG
EST: gi|192303460|gb|FG997476.1|FG997476
EST:     GCCACAAATACTGTCCCTGCCATTACTTTCATCATGGCTGTTTTAATTAG                         GATGGAAAGCATTTCCATAAAACGTGTGCATGGATTGGCCAAGATTTTGGG
genomic: GCCACAAATACTGTCCCTGCCATTACTTTCATCATGGCTGTTTTAATTAGgtaaaattaa ... gaaatttcagGATGGAAAGCATTTCCATAAAACGTGTGCATGGATTGGCCAAGATTTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaagcagggtcaagacctatagagagaactgaaattggttttggaaatttcagGATGGAAAGCATTTCCATAAAACGTGTGCATGGATTGGCCAAGATTTTGGGGTCCGTTCTAAGCCTTGCTGGGGCAATAACATTTGCTTTAGTTAAAGGA
                                              aaatttca  TA-rich tract