1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtcgttaccttctacagcctataaatgtacattgagaagtttttggacttagttgtcattgtctctgggacatttttttaattcttgactgtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACAACATGCACAGAGTATATTATATCAATGGATGCGGATAACATATC
species | Glycine max |
transcript | GLYMA16G28200.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGACGTACCACC-ATTCCTTTGTCTTAGTCCTG CATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAEST: gi|151394298|gb|EV264169.1|EV264169
genomic: CTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaa ... gtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
EST: GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTG CATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAEST: gi|254340191|gb|GR858316.1|GR858316
genomic: GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaa ... gtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
EST: GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTG CATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAEST: gi|192295189|gb|FG986908.1|FG986908
genomic: GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaa ... gtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
EST: GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTG CATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
genomic: GAGAGACAAATCTAATCTGACGTACCACCTATTCCTTTGTCTTAGTCCTGgtaagcacaa ... gtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAA
gacttagttgtcattgtctctgggacatttttttaattcttgactgtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACAACATGCACAGAGTATATTATATCAATGGATGCGGATAACATATC
tcttgac putative branch site (score: 3)
acatttttttaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgttaccttctacagcctataaatgtacattgagaagtttttggacttagttgtcattgtctctgggacatttttttaattcttgactgtccatgcagCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACAACATGCACAGAGTATATTATATCAATGGATGCGGATAACATATC
- - - -ccttcta
- - - - - - - - - - - -aatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtctctg