1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgcacttttttttttttttttgctgaagtataccattttcacttcagaggagctaaaattttcttgtaatagtttcttaaaaatatttcttgccttgcagAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTCCAGTCCAAAGTTCATCGGGCCAAGGAATGTCTAGAGGCAGTTCAACAAG
species | Glycine max |
transcript | GLYMA16G27940.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACGGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAG AAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTCEST: gi|298197474|gb|HO044953.1|HO044953
genomic: GACGGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAGgttagtatat ... tgccttgcagAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTC
EST: GACAGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAG AAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGEST: gi|17401817|gb|BM178599.1|BM178599
genomic: GACGGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAGgttagtatat ... tgccttgcagAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAG
EST: GACAGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAG AAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTCEST: gi|14990561|gb|BI316234.1|BI316234
genomic: GACGGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAGgttagtatat ... tgccttgcagAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTC
EST: GACAGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAG AAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTC
genomic: GACGGATTCTTGGTGTTACAGAGGAAACTCCCTGGGAGGAGATTATCAAGgttagtatat ... tgccttgcagAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTC
agaggagctaaaattttcttgtaatagtttcttaaaaatatttcttgccttgcagAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTCCAGTCCAAAGTTCATCGGGCCAAGGAATGTCTAGAGGCAGTTCAACAAG
agctaaa putative branch site (score: 3)
tttcttgcctt putative PPT
taaaattttcttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcacttttttttttttttttgctgaagtataccattttcacttcagaggagctaaaattttcttgtaatagtttcttaaaaatatttcttgccttgcagAAATATGACAATTTATTTGAGAATAATGCTAAGAATGGGAGTTTCTACCTCCAGTCCAAAGTTCATCGGGCCAAGGAATGTCTAGAGGCAGTTCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
tgcactt
- - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - -cacttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata