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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtgattatcaaaatttctctgaacttaaaggtttcattatcgattattttgtctcatttccatattcccttttcagctgcagCATCTGATATGGACTTTGGTGACATTGATTTTTCT

Basic information

species Glycine max
transcript GLYMA16G27570.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298188987|gb|HO035712.1|HO035712
EST:     AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAAC                         CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT
genomic: AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAACgttagtgatt ... tcagctgcagC---A---TCTGATATGGACTTTGGTGACATTGATTTTTCT
EST: gi|209703751|gb|BW665024.1|BW665024
EST:     AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAAC                         CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT
genomic: AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAACgttagtgatt ... tcagctgcagC---A---TCTGATATGGACTTTGGTGACATTGATTTTTCT
EST: gi|192327386|gb|FK018148.1|FK018148
EST:     AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAAC                         CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT
genomic: AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAACgttagtgatt ... tcagctgcagC---A---TCTGATATGGACTTTGGTGACATTGATTTTTCT
EST: gi|192323243|gb|FK017409.1|FK017409
EST:     AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAAC                         CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT
genomic: AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAACgttagtgatt ... tcagctgcagC---A---TCTGATATGGACTTTGGTGACATTGATTTTTCT
EST: gi|192295643|gb|FG990497.1|FG990497
EST:     AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAACCTGC                      
genomic: AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAA----Cgttagtgatt ... tcagctg
EST: gi|192295643|gb|FG990497.1|FG990497
EST:     AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAACCTGC                      
genomic: AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAA----Cgttagtgatt ... tcagctg
EST: gi|192295643|gb|FG990497.1|FG990497
EST:     AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAACCTGC                      
genomic: AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAA----Cgttagtgatt ... tcagctg
EST: gi|192297482|gb|FG989517.1|FG989517
EST:     AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAAC                         CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT
genomic: AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAACgttagtgatt ... tcagctgcagC---A---TCTGATATGGACTTTGGTGACATTGATTTTTCT
EST: gi|213614007|gb|DB960972.1|DB960972
EST:     AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAAC                         CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT
genomic: AGTTGATTGGGATAAATGGGTTGATGAAGATGAGGAGCAAGATAATAAACgttagtgatt ... tcagctgcagC---A---TCTGATATGGACTTTGGTGACATTGATTTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaggtttcattatcgattattttgtctcatttccatattcccttttcagctgcagCATCTGATATGGACTTTGGTGACATTGATTTTTCT
                   ttttgtctcatttcca  CT-rich tract
        attatcgattatttt  TA-rich tract