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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctatttgagaattttataccaatggcttaggacataaagaaaattcttttggtaatttttctttggtagcacagttgctgatgtggtcatctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATTGAACTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTC

Basic information

species Glycine max
transcript GLYMA16G27420.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37994616|gb|CF806293.1|CF806293
EST:     AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGG                         GTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT
genomic: AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGGgtatacatga ... atctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT
EST: gi|254315421|gb|GR825230.1|GR825230
EST:     AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTATG                         GTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT
genomic: AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGGgtatacatga ... atctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT
EST: gi|9564471|gb|BE473980.1|BE473980
EST:     AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGG                         GTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT
genomic: AGATTGCCAAGCTGCTTGAGACTGGCCAAGAAGCCACGGCTCGAATTAGGgtatacatga ... atctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttggtaatttttctttggtagcacagttgctgatgtggtcatctgtgcagGTAGAACATATTATAAGAGAGGAGAACATGATGGCTGCTCAAGAAATCATTGAACTCTTTTGCGAACTTATTGCGGTCCGCCTTCCAATAATTGAATCTC
                                tgctgat  putative branch site (score: 3)
         taatttttcttt  TA-rich tract