1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagaagaacaccagctagcttttcgattaatgggtttggatgtttgttgttgcttattgtgacacgatcaaattctgttttattttttttttctctttttagtttactaaattaaattgtgttaatttgatttaagGTTTGAAGAGCTCTTTTAAAACTAGTTTGGGGAAGCTGCTGGCGGATGCATTGCGGTATTATTATTTCGACAG
species | Glycine max |
transcript | GLYMA16G27060.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGAAGAGGTGTCTTCTGAGCTCAAAGGGACCTCCATATTTCTGGTTG GTTTGAAGAGCTCTTTTAAAACTAGTTTGGGGAAGCTGCTGGCGGATGCATEST: gi|15338067|gb|BI498723.1|BI498723
genomic: GCAGCAGAGGTGTCTTCTGAGCTCAAAGGGACCTCCATATTTCTGGTTGgtaagaagaa ... ttgatttaagGTTTGAAGAGCTCTTTTAAAACTAGTTTGGGGAAGCTGCTGGCGGATGCAT
EST: AGCAGCAGAGGTGTCTTCTGAGCTCAAAGGGACCTCCATATTTCTGGTTG GTTTGAAGAGCTCTTTTAAAACTAGTTTGGGGAAGCTGCTGGCGGATGCAT
genomic: AGCAGCAGAGGTGTCTTCTGAGCTCAAAGGGACCTCCATATTTCTGGTTGgtaagaagaa ... ttgatttaagGTTTGAAGAGCTCTTTTAAAACTAGTTTGGGGAAGCTGCTGGCGGATGCAT
attttttttttctctttttagtttactaaattaaattgtgttaatttgatttaagGTTTGAAGAGCTCTTTTAAAACTAGTTTGGGGAAGCTGCTGGCGGATGCATTGCGGTATTATTATTTCGACAG
tttttagtttactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagaacaccagctagcttttcgattaatgggtttggatgtttgttgttgcttattgtgacacgatcaaattctgttttattttttttttctctttttagtttactaaattaaattgtgttaatttgatttaagGTTTGAAGAGCTCTTTTAAAACTAGTTTGGGGAAGCTGCTGGCGGATGCATTGCGGTATTATTATTTCGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT