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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatcttctttctttttcatatttattttgatatttcttactattctttacgagttgtctgcacagaaatttccaaagagctttctgttttgtagGAGTTGCTGAGATTTCTATTAGAGATAGACAG

Basic information

species Glycine max
transcript GLYMA16G27020.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274722|gb|BF325057.1|BF325057
EST:     TGATAAGCGCCATGCTGGTGATTTGGGCAACATTGCTGCAGGCCCTGATG                         GAGTTGCTGAGATTTCTATTAGAGATAGACAG
genomic: TGATAAGCGCCATGCTGGTGATTTGGGCAACATTGCTGCAGGCCCTGATGgtattatctt ... tgttttgtagGAGTTGCTGAGATTTCTATTAGAGATAGACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattctttacgagttgtctgcacagaaatttccaaagagctttctgttttgtagGAGTTGCTGAGATTTCTATTAGAGATAGACAG
                                        ctttctgtttt  CT-rich tract
                        agaaattt  TA-rich tract