1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ataatatttggatcaacatcatgcatatttcattgtgtttctctgtattcttatgatgtttaaaacttgttatgtaaatgtgtcttggatgccatcatagACAACTGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGCTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAG
species | Glycine max |
transcript | GLYMA16G26380.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATCTGGGTTGTTCCCTTCAGAAAATCAGTGAAGCATATCATGCGTGAG ACAACTGTTGTGACCACTAGAAAGATTTTAGAAAGAATTGCTGTGCATTATEST: gi|58015676|gb|CX702418.1|CX702418
genomic: TGATCTGG-TTGTTCCCTTCAGAAAATCAGTGAAGCATATCATGCGTGAGgtgagatttt ... gccatcatagACAACTGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGCTGTGCATTAT
EST: TTGATCTGGTTGTTCCCTTCAGAAAATCAGTGAAGCATATCATGCGTGAG ACAACTGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGCTGTGCATTATEST: gi|58015425|gb|CX702167.1|CX702167
genomic: TTGATCTGGTTGTTCCCTTCAGAAAATCAGTGAAGCATATCATGCGTGAGgtgagatttt ... gccatcatagACAACTGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGCTGTGCATTAT
EST: TTGATCTGGTTGTTCCCTTCAGAAAATCAGTGAAGCATATCATGCGTGAG ACAACTGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGCTGTGCATTAT
genomic: TTGATCTGGTTGTTCCCTTCAGAAAATCAGTGAAGCATATCATGCGTGAGgtgagatttt ... gccatcatagACAACTGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGCTGTGCATTAT
tattcttatgatgtttaaaacttgttatgtaaatgtgtcttggatgccatcatagACAACTGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGCTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAG
tttaaaacttgttatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataatatttggatcaacatcatgcatatttcattgtgtttctctgtattcttatgatgtttaaaacttgttatgtaaatgtgtcttggatgccatcatagACAACTGTTGTGACCACTAGAAGGATTTTAGAAAGAATTGCTGTGCATTATGTTTCACAAAGAATGGCATGGAAGCTTCTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - -atcaaca
- - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtcttg