1 5' 3' | 2 5' 3' | 3 5' 3' |
...acaagtgtttcatctttaaattttgaccttcttcattattgctttgttactgccatcttaggttttgttttgatatctagtcttttatgtttcttgccagCAATGCCGAGAAGGCCAGGATGTCCTTCCAGAGCAAATTAAAGAAGTATTGTTGGACACAGCAGGTTTCCATGGAATGATGTGAGAGTAGTTCTTGACAA
species | Glycine max |
transcript | GLYMA16G26290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGTAATCAGTTGTTTCAATGGTTTTTCTTTAGATGTGTTTAGAGCTGAG CAATGCCGAGAAGGCCAGGATGTCCTTCCAGAGCAAATTAAAGAAGTATTGEST: gi|58019470|gb|CX706212.1|CX706212
genomic: CCGTAATCAGTTGTTTCAATGGTTTTTCTTTAGATGTGTTTAGAGCTGAGgtatgtagtt ... ttcttgccagCAATGCCGAGAAGGCCAGGATGTCCTTCCAGAGCAAATTAAAGAAGTATTG
EST: CCGTAATCAGTTGTTTCAATGGTTTTTCTTTAGATGTGTTTAGAGCTGAG CAATGCCGAGAAGGCCAGGATGTCCTTCCAGAGCAAATTAAAGAAGTATTG
genomic: CCGTAATCAGTTGTTTCAATGGTTTTTCTTTAGATGTGTTTAGAGCTGAGgtatgtagtt ... ttcttgccagCAATGCCGAGAAGGCCAGGATGTCCTTCCAGAGCAAATTAAAGAAGTATTG
gttactgccatcttaggttttgttttgatatctagtcttttatgtttcttgccagCAATGCCGAGAAGGCCAGGATGTCCTTCCAGAGCAAATTAAAGAAGTATTGTTGGACACAGCAGGTTTCCATGGAATGATGTGAGAGTAGTTCTTGACAA
ttttgat putative branch site (score: 4)
tcttttatgtttctt putative PPT
ttttgttttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaagtgtttcatctttaaattttgaccttcttcattattgctttgttactgccatcttaggttttgttttgatatctagtcttttatgtttcttgccagCAATGCCGAGAAGGCCAGGATGTCCTTCCAGAGCAAATTAAAGAAGTATTGTTGGACACAGCAGGTTTCCATGGAATGATGTGAGAGTAGTTCTTGACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
-caagtgt
- - - - - - - - - - - - - ccttctt
- - - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - tgccatc