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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaactcctcagccataacatctattttttttatcagtaagaatcgaactcagatactgagagatttataataattcgcacactctatttaaccaattgagctagaaaatggatgtactactaacatttgtttgttgtatagaaaattgacaacattttgttatttgttcaatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC

Basic information

species Glycine max
transcript GLYMA16G26130.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26130.2 (Glycine max), 3'ss of exon 3
lower sequence: AT3G54890.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaagaactcctcagccataacatctattttttttatcagtaagaatcgaactcagatactgagagatttataataattcgcacactctatttaaccaattgagctagaaaatggatgtactactaacatttgtttgttgtatagaaaattgacaacattttgttatttgttcaatgtt-tagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC
                                                                             |  |||||| | |   |||  |     || ||  |    | |  ||| ||  | | | |  |||                 |||| ||  ||| |   |||   ||| || |||||  ||||||| ||||| ||||||||||| ||||| || ||||| || || || ||||| ||||||||||||||  |||||||||| || ||
----------------------------------------------------------------------------gtaagcacacacaac--aacttacctttcttgatcaaacttatg-tacaaatgtatatctaatgt------------tggtgtttt-ttgcttggtgggtgtaacagGGCGGCTTGCGCTGTTGGCGTTTGTAGGATTCTGTGTGCAACAGTCGGCTTACCCGGGGACAGGACCATTGGAGAACTTGGCAACTCACTTGGCGGATCC

upper sequence: GLYMA16G26130.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g04140.t01 (Vitis vinifera), 3'ss of exon 3
gtaagaactcctcagccataacatctattttttttatcagtaagaatcgaactcagatactgagagatttataataattcgcacactctatttaaccaattgagctagaaaatggatgtactactaacatttgtttgttgtatagaaaattgacaacattttgttatttgttcaatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC
                                                                          | |  | | || |||  |||  || |  | ||   |  |   | | |    ||    | |  | |   |||   ||      ||  ||| | |||  |||||||  ||| || |||||  | ||||| || || || ||||| || ||||| || ||||||||||| || ||||| ||||||||  ||||| |||||||||| |||||
-------------------------------------------------------------------------gtgaa-cactcattctcctta--cactctaactcccatgtcagt-tcccctaaatgcctatacgat---tagctcatctcattcaccttgctttttcctcaatgtgcagGCCGCCTTGCAATTTTGGCGTTCGTCGGGTTCTGCGTCCAACAGTCGGCTTATCCCGGAACAGGACCATTGGAGAATCTGGCTTCTCACTTGGCAGACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31310624|gb|CD395827.1|CD395827
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|13251847|gb|BG362750.1|BG362750
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31455979|gb|CD398007.1|CD398007
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCCAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATT
EST: gi|12774333|gb|BG239260.1|BG239260
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|15204800|gb|BI427568.1|BI427568
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209714546|gb|BW662209.1|BW662209
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209721878|gb|BW666447.1|BW666447
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCT
EST: gi|31308756|gb|CD393959.1|CD393959
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|20075906|gb|BQ094689.1|BQ094689
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|7691300|gb|AW759493.1|AW759493
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|17518500|gb|BM187542.1|BM187542
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209726101|gb|BW675275.1|BW675275
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|17519514|gb|BM188556.1|BM188556
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209714722|gb|BW674260.1|BW674260
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31456842|gb|CD398870.1|CD398870
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31464248|gb|CD406276.1|CD406276
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209717228|gb|BW657697.1|BW657697
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|11412397|gb|BF424408.1|BF424408
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|192299119|gb|FG990419.1|FG990419
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|22525368|gb|BU084179.1|BU084179
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|9821068|gb|BE556578.1|BE556578
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|213607305|gb|DB957141.1|DB957141
EST:     TAAGGACCCTAAAACATTCCACGAATACNAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTT
EST: gi|209704712|gb|BW656677.1|BW656677
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|5508958|gb|AI855516.1|AI855516
EST:     TAAGGACCCTANAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTNTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|22522379|gb|BU081190.1|BU081190
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209729376|gb|BW663665.1|BW663665
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTT
EST: gi|51343067|gb|CO983800.1|CO983800
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|15204740|gb|BI427508.1|BI427508
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31308019|gb|CD393222.1|CD393222
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209711204|gb|BW683819.1|BW683819
EST:     TAAGGACCCTAAAACATTCCACGAATACNAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTT
EST: gi|209724483|gb|BW658200.1|BW658200
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|209721879|gb|BW666448.1|BW666448
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|213603108|gb|DB960413.1|DB960413
EST:     TAAGGACCCTAAAACATTCCACGAATACNAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTG
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTG
EST: gi|17402022|gb|BM178804.1|BM178804
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31464303|gb|CD406331.1|CD406331
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|151398535|gb|EV268406.1|EV268406
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31462609|gb|CD404637.1|CD404637
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
EST: gi|31311067|gb|CD396270.1|CD396270
EST:     TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATG                         GACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT
genomic: TAAGGACCCTAAAACATTCCACGAATACAAAGTCAAAGAAATTAAAAATGgtaagaactc ... caatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgtttgttgtatagaaaattgacaacattttgttatttgttcaatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC
                    aattgac  putative branch site (score: 3)
                                       tttgttc  putative PPT
                           aacattttgttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaactcctcagccataacatctattttttttatcagtaagaatcgaactcagatactgagagatttataataattcgcacactctatttaaccaattgagctagaaaatggatgtactactaacatttgtttgttgtatagaaaattgacaacattttgttatttgttcaatgtttagGACGTCTTGCTTTGTTGGCTTTTGTGGGATTCTGTGTTCAACAATCAGCTTATCCCGGCACTGGACCTTTGGAGAACTTGGCTGCTCACTTGGCTGACCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT