1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gtagttgtatttcattattattatttattaatctttttgagccacaaaaaattgcaaccttgatcttattaatgatcagtgtcaatgttgtaattcacagCTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGG
species | Glycine max |
transcript | GLYMA16G25700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCCAACACAGTACTACACAGCTCTG CTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGACEST: gi|213589597|gb|DB965813.1|DB965813
genomic: TTGCCAACACAGTACTACACAGCTCTGgtaattaaat ... taattcacagCTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGAC
EST: TTGCCAACACAGTACTACACAGCTCTG CTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGACEST: gi|151411482|gb|EV281293.1|EV281293
genomic: TTGCCAACACAGTACTACACAGCTCTGgtaattaaat ... taattcacagCTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGAC
EST: TTGCCAACACAGTACTACACAGCTCTG CTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGAC
genomic: TTGCCAACACAGTACTACACAGCTCTGgtaattaaat ... taattcacagCTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGAC
aaaaaattgcaaccttgatcttattaatgatcagtgtcaatgttgtaattcacagCTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGG
tattaat putative branch site (score: 2)
ttgatcttattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttgtatttcattattattatttattaatctttttgagccacaaaaaattgcaaccttgatcttattaatgatcagtgtcaatgttgtaattcacagCTTTACACAATCACTACGATCGTATTACTACTGCTAATCGTATACTATGACTACATCAGCAGATGGTACAAACATCGTCAGAAGGTCAACCTCAAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - -ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagtgtc