1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaagccacatagctgatgaagtttgtgtgtttcaaaacaagttcatttatatttcttgaaaataaacaggctaacacatctgtcacaatcacatatccagGTCTTTACAATACCTGTTGCCCCAGGAGATGTTGTCGTTGCTGGAACAGATGGATTGTTTGACAATCTGTACAATGATGAGGTCACTGAAGTTGTTTTAC
species | Glycine max |
transcript | GLYMA16G25560.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATATCAACTGGAGAGTGGCAATGGAGGTGATCTACCCAGCTCTGGTGAG GTCTTTACAATACCTGTTGCCCCAGGAGATGTTGTCGTTGCTGGAACAGATEST: gi|151409984|gb|EV279792.1|EV279792
genomic: CATATCAACTGGAGAGTGGCAATGGAGGTGATCTACCCAGCTCTGGTGAGgtaagttctc ... acatatccagGTCTTTACAATACCTGTTGCCCCAGGAGATGTTGTCGTTGCTGGAACAGAT
EST: CATATCAACTGGAGAGTGGCAATGGAGGTGATCTACCCAGCTCTGGTGAG GTCTTTACAATACCTGTTGCTCCAGGAGATGTTGTCGTTGCTGGAACAGATEST: gi|31306700|gb|CD391903.1|CD391903
genomic: CATATCAACTGGAGAGTGGCAATGGAGGTGATCTACCCAGCTCTGGTGAGgtaagttctc ... acatatccagGTCTTTACAATACCTGTTGCCCCAGGAGATGTTGTCGTTGCTGGAACAGAT
EST: CATATCAACTGGAGATTGGCAATGGAGGTGATCTACCCAGCTCTGGTGAG GTCTTTACAATACCTCTTGCCCCAGGAGATGTTGTCGTTGCTGGAACAGAT
genomic: CATATCAACTGGAGAGTGGCAATGGAGGTGATCTACCCAGCTCTGGTGAGgtaagttctc ... acatatccagGTCTTTACAATACCTGTTGCCCCAGGAGATGTTGTCGTTGCTGGAACAGAT
tttatatttcttgaaaataaacaggctaacacatctgtcacaatcacatatccagGTCTTTACAATACCTGTTGCCCCAGGAGATGTTGTCGTTGCTGGAACAGATGGATTGTTTGACAATCTGTACAATGATGAGGTCACTGAAGTTGTTTTAC
ggctaac putative branch site (score: 2)
atttcttgaaaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagccacatagctgatgaagtttgtgtgtttcaaaacaagttcatttatatttcttgaaaataaacaggctaacacatctgtcacaatcacatatccagGTCTTTACAATACCTGTTGCCCCAGGAGATGTTGTCGTTGCTGGAACAGATGGATTGTTTGACAATCTGTACAATGATGAGGTCACTGAAGTTGTTTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- -gccacat
- - - - - -gctgatg
- - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - -aaaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtcac