1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctttctttcttactcctatttaattaataatagtagttcattataataatgttgtttttgttgctttgcttttcttgatttttgtttgtggtgtttcagAGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTGCTACTGCTGTAAGTGGGAGCTGTGGCAGCAACAGCACCTGCTCAACAAG
species | Glycine max |
transcript | GLYMA16G25550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAG AGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTGEST: gi|120533267|gb|EH261400.1|EH261400
genomic: TACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAGgtacgttgga ... ggtgtttcagAGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTG
EST: TACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAG AGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTGEST: gi|120534133|gb|EH262266.1|EH262266
genomic: TACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAGgtacgttgga ... ggtgtttcagAGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTG
EST: TACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAG AGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTGEST: gi|120533468|gb|EH261601.1|EH261601
genomic: TACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAGgtacgttgga ... ggtgtttcagAGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTG
EST: TACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAG AGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTG
genomic: TACGCAGACAAATAGTGCTATGTCCTGTGGTTTGCAGACGCAGAACCTAGgtacgttgga ... ggtgtttcagAGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTG
aataatgttgtttttgttgctttgcttttcttgatttttgtttgtggtgtttcagAGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTGCTACTGCTGTAAGTGGGAGCTGTGGCAGCAACAGCACCTGCTCAACAAG
tcttgat putative branch site (score: 4)
ttttcttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctttctttcttactcctatttaattaataatagtagttcattataataatgttgtttttgttgctttgcttttcttgatttttgtttgtggtgtttcagAGTTGCCAGAAACCAATCCCCCGCAAGTCATTGAGGAGGAGCCACAAGGTGCTACTGCTGTAAGTGGGAGCTGTGGCAGCAACAGCACCTGCTCAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt