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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggaccaaatgaaactgccatcaagtgatagccttatggatattgctctttcgtgtattataaacctctatttacaattaaataacttcctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAG

Basic information

species Glycine max
transcript GLYMA16G25460.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25460.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g01720.t01 (Vitis vinifera), 3'ss of exon 4
--aaggaccaaatgaaactgccatcaagtgatagccttatggatattgctctttcgtgtattataaacctctatttacaattaaataacttcctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAG
    ||  |   |  |||||   |    |  |    ||||   | | |     | |     |  ||||||  | | ||| |  |    | |  |    ||||  |||  |||| ||||| |||||||| || ||||| ||||||||| | |||||||||||||  |||||| | || ||||| ||||||||||||||||||
atctggggctgct--aactgtagtatgttttttatgttatatctgtagtgagctggatccatcaaaacctgcactaacagtatacatccatgttcttaccagCATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193590500|gb|FK544978.1|FK544978
EST:     AGGAAACACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGG                         GCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTT
genomic: AGGAAACACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGGgttagtttga ... ctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTT
EST: gi|298190241|gb|HO032362.1|HO032362
EST:     CACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGG                         GCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTT
genomic: CACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGGgttagtttga ... ctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctttcgtgtattataaacctctatttacaattaaataacttcctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAG
                                   aaataac  putative branch site (score: 2)
                                         cttcctac  CT-rich tract
           tattataaacctctat  TA-rich tract