1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaggaccaaatgaaactgccatcaagtgatagccttatggatattgctctttcgtgtattataaacctctatttacaattaaataacttcctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAG
species | Glycine max |
transcript | GLYMA16G25460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAAACACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGG GCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTEST: gi|298190241|gb|HO032362.1|HO032362
genomic: AGGAAACACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGGgttagtttga ... ctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTT
EST: CACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGG GCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTT
genomic: CACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGGgttagtttga ... ctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTT
gctctttcgtgtattataaacctctatttacaattaaataacttcctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAG
aaataac putative branch site (score: 2)
cttcctac CT-rich tract
tattataaacctctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggaccaaatgaaactgccatcaagtgatagccttatggatattgctctttcgtgtattataaacctctatttacaattaaataacttcctacatccagGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAG
- - - -aaatgaaa
- - - - - - - - tgccatc
- - - - - - - - - - - - - - - - ccttatg