1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaattcttattattggtttggatttgattgggatggtcaattatttggtgatgactttgggaacatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAG
species | Glycine max |
transcript | GLYMA16G25220.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|298190530|gb|HO032651.1|HO032651
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTEST: gi|22540274|gb|BU090117.1|BU090117
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTT
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGGTTATCTTTCCEST: gi|15286034|gb|BI469925.1|BI469925
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|207814375|gb|GD786898.1|GD786898
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|298186464|gb|HO037097.1|HO037097
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
ttggatttgattgggatggtcaattatttggtgatgactttgggaacatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAG
atttgat putative branch site (score: 5)
cattttt putative PPT
tcaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcttattattggtttggatttgattgggatggtcaattatttggtgatgactttgggaacatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC