1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattcttattattggtttggatttgattgggatggtcaattatttggtgatgactttgggaacatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAG
species | Glycine max |
transcript | GLYMA16G25220.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|298190530|gb|HO032651.1|HO032651
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTEST: gi|193675569|gb|FK616559.1|FK616559
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTT
EST: GCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|15286034|gb|BI469925.1|BI469925
genomic: GCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|22540274|gb|BU090117.1|BU090117
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGGTTATCTTTCCEST: gi|151404299|gb|EV274109.1|EV274109
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|6846190|gb|AW348480.1|AW348480
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|207814375|gb|GD786898.1|GD786898
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|193521761|gb|FK481214.1|FK481214
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: GCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|298186464|gb|HO037097.1|HO037097
genomic: GCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|193482185|gb|FK444476.1|FK444476
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: GATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|192305678|gb|FG998028.1|FG998028
genomic: GATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGTTGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|4290377|gb|AI438065.1|AI438065
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|12691440|gb|BG157776.1|BG157776
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCEST: gi|192308814|gb|FG999811.1|FG999811
genomic: CATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaattctta ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCC
ttggatttgattgggatggtcaattatttggtgatgactttgggaacatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAG
atttgat putative branch site (score: 5)
cattttt putative PPT
tcaattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcttattattggtttggatttgattgggatggtcaattatttggtgatgactttgggaacatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC