1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtattaatgacatctttcttatcatgttcatcaaatataaaaattaagtctggtctaattaatggtgatattttatgaatacaaaataaacatgtttcagGACATATTTGAGATGGAGAAGAAGATAGAAAAATTACACATTAGACGAGCTGTTCTCAAGAACACCAGAGAAAGTTATTCCTCTATTTCGACAATTGAGT
species | Glycine max |
transcript | GLYMA16G24560.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAACAACTTTTGACCCAAAGGGTTATTGCCACTAGGAGTGGCAAAATAAG GACATA-TTGAGATGGAGAAGAAGATAGAAAAATTACACATTAGACGAGCTEST: gi|254316013|gb|GR825822.1|GR825822
genomic: CAACAACTTTTGACCCAAA-GGTTATTGCCACTAGGAGTGGCAAAATAAGgtaagtttgg ... catgtttcagGACATATTTGAGATGGAGAAGAAGATAGAAAAATTACACATTAGACGAGCT
EST: GCAACAACTTTTGACCCAAAGGTTATTGCCACTAGGAGTGGCAAAATAAG GACATATTTGAGATGGAGAAGAAGATAGAAAAATTACACATTAGACGAGCT
genomic: GCAACAACTTTTGACCCAAAGGTTATTGCCACTAGGAGTGGCAAAATAAGgtaagtttgg ... catgtttcagGACATATTTGAGATGGAGAAGAAGATAGAAAAATTACACATTAGACGAGCT
aagtctggtctaattaatggtgatattttatgaatacaaaataaacatgtttcagGACATATTTGAGATGGAGAAGAAGATAGAAAAATTACACATTAGACGAGCTGTTCTCAAGAACACCAGAGAAAGTTATTCCTCTATTTCGACAATTGAGT
aattaat putative branch site (score: 3)
taattaatggtgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaatgacatctttcttatcatgttcatcaaatataaaaattaagtctggtctaattaatggtgatattttatgaatacaaaataaacatgtttcagGACATATTTGAGATGGAGAAGAAGATAGAAAAATTACACATTAGACGAGCTGTTCTCAAGAACACCAGAGAAAGTTATTCCTCTATTTCGACAATTGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - -tgacatc
- - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa