Sequence
atgc intronic sequence ATGC exonic sequencegtaaggatagcacataaaaaagtgaactttttttactcactttcacccttttgtatgaaacttaattgggcttgtttgaaatgtgtagGGAAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCCTATCGCCGCGCACTTTTGATAGCTCCAGACAACAACAAGATGT
Basic information
species | Glycine max |
transcript | GLYMA16G23380.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G23380.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03720.t01 (Vitis vinifera), 3'ss of exon 3
gtaaggatagcacataaaaaagtgaactttttttactcactttcacccttttgtatgaaacttaattgggcttgtttgaaatgtgtagGGAAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCCTATCGCCGCGCACTTTTGATAGCTCCAGACAACAACAAGATGT
| |||||| ||| | || || | || || | || | | | ||| | | |||| ||||| ||||||||| ||||||||||||||||||| || ||||||||||| ||||| | || ||||||| || |||||||| || ||||||||||
-----gtaagcacacggtttttctgctagtttcagtcctctatctcactcccttaaactccatattgagacgaatttccattt--cagGGGAACTTAGGATGGGCATTGATGCAGCAGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCCATGGCTCCAGATAATAACAAGATGT
upper sequence: GLYMA16G23380.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03740.t01 (Vitis vinifera), 3'ss of exon 3
gtaaggatagcacataaaaaagtgaactttttttactcactttcacccttt-----tgtatgaaactta-attgggcttgtttgaaatgtgtagGGAAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCCTATCGCCGCGCACTTTTGATAGCTCCAGACAACAACAAGATGT
||| | | ||||| | || || ||| | | | || | |||| | || || | |||| ||||| ||||||||| ||||||||| ||||||||| || ||||||||||| ||||| | || ||||||| || ||||||| || ||||||||||
-------------gtaagcacacgg--tttttctgctagtttcagtcctctatctctccctaaactccatattgagacgaatttccat-ttcagGGGAACTTAGGATGGGCATTGATGCAGCGGAACAACTATATCGAAGCAGAAGATGCCTACAGGCGGGCACTTTCAATGACTCCAGATAATAACAAGATGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactcactttcacccttttgtatgaaacttaattgggcttgtttgaaatgtgtagGGAAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCCTATCGCCGCGCACTTTTGATAGCTCCAGACAACAACAAGATGT
tatgaaacttaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggatagcacataaaaaagtgaactttttttactcactttcacccttttgtatgaaacttaattgggcttgtttgaaatgtgtagGGAAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGAGGCCTATCGCCGCGCACTTTTGATAGCTCCAGACAACAACAAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG