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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttcccactatttcaaggtttatgttcctagtattcctcaaatttaaaatgcacttttacaggttacattcgatgtaaatgtaatgtttccataacaattgtaaagaaccatatcttatttatattaatttaaaagtgttaataaacggtgtatgtgttattttcactttcagTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGCACAAAGCTTG

Basic information

species Glycine max
transcript GLYMA16G23340.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23340.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 3'ss of exon 4
gtacttttcccactatttcaaggtttatgttcctagtattcctcaaatttaaaatgcacttttacaggttacattcgatgtaaatgtaatgtttccataacaattgtaaagaaccatatcttatttatattaatttaaaa-gtgttaataaacggtgta-tgtgttattttcactttcagTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGCACAAAGCTTG
                                                      ||     ||   || |  |   || || |  | | | ||    ||   |  |||||| |  |    || |  ||   ||||||  | ||  |   | |   | || ||| |    |||| ||||||||||||||||| ||||| ||||||||||||| |||||| ||  || | |||||||| |||||||
-----------------------------------------------------gtgaggacttgatggatcaaaatgaagtgatagcactttt----tagtga--gtaaaggaataccaattttagatggcaatttattatgtcctgggagattttttaatgtttcggcttcattttcagTGGATTCCAGAATTGAAGCATTATGCACCTGGTGTTCCGATAGTTCTTGTTGGCACTAAGCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330643|gb|FK021962.1|FK021962
EST:     TAGCTTTCCCTCTGATTAGCAAGGCCAGTTATGAAAATGTTTCCAAGAAG                         TGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTT
genomic: TAGCTTTCTCTCTGATTAGCAAGGCCAGTTATGAAAATGTTTCCAAGAAGgtacttttcc ... tcactttcagTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTT
EST: gi|192330642|gb|FK021961.1|FK021961
EST:     TAGCTTTCCCTCTGATTAGCAAGGCCAGTTATGAAAATGTTTCCAAGAAG                         TGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTT
genomic: TAGCTTTCTCTCTGATTAGCAAGGCCAGTTATGAAAATGTTTCCAAGAAGgtacttttcc ... tcactttcagTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatattaatttaaaagtgttaataaacggtgtatgtgttattttcactttcagTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGCACAAAGCTTG
                                       ttattttcactttc  CT-rich tract
     attaatttaaaagtgt  TA-rich tract