Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggctctctgcttcgggtgaaggtttttggagttgacgtgtttagtgcttgattggggatttgatttgcagGAATTTGGTAACGTTGAGACGCCTATGTATACTAGACTGCGACATTTTTTCTCCACTATCTATAACAG

Basic information

species Glycine max
transcript GLYMA16G19540.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213588323|gb|DB967809.1|DB967809
EST:     TCGGTTGGAGCACAGGGGCCTCTCCTTCGGGGAGATTTGCTACTTTTTTG                         GAATTTGGTAACGTTGAGAC
genomic: TCGGTTGGAGCAAAGGGGCCTCTCCTTCGGGGAGATTTGCTACTTTTTTGgtgaggctct ... tgatttgcagGAATTTGGTAACGTTGAGAC
EST: gi|19270787|gb|BM887043.1|BM887043
EST:     TCGGTTGGAGCAAAGGGGCCTCTCCTTCGGGGAGATTTGCTACTTTTTTG                         GAATTTGGTAACGTTGAGACGCCTATGTATACTAGACTGCGACATTTTTTC
genomic: TCGGTTGGAGCAAAGGGGCCTCTCCTTCGGGGAGATTTGCTACTTTTTTGgtgaggctct ... tgatttgcagGAATTTGGTAACGTTGAGACGCCTATGTATACTAGACTGCGACATTTTTTC
EST: gi|213591717|gb|DB969817.1|DB969817
EST:     TCGGTTGGAGCAAAGGGGCCTCTCCTTCGGGGAGATTTGCTACTTTTTTG                         GAATTTGGTAACGTTGAGACGCCTATGTATACTAGACTGCGACATTTTTTC
genomic: TCGGTTGGAGCAAAGGGGCCTCTCCTTCGGGGAGATTTGCTACTTTTTTGgtgaggctct ... tgatttgcagGAATTTGGTAACGTTGAGACGCCTATGTATACTAGACTGCGACATTTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaaggtttttggagttgacgtgtttagtgcttgattggggatttgatttgcagGAATTTGGTAACGTTGAGACGCCTATGTATACTAGACTGCGACATTTTTTCTCCACTATCTATAACAG
                                          atttgattt  TA-rich tract