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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatatgacactttgaatgtatatgatatgtgattattgttcctagttctgtagttgcttggggtgcagttggccagtttcatatctgtgagggaattttgtttctctaaaattgatcagtgcttgatgatttgtttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTTTCACTGCTAAAATATTAAATGCCGAGCAATGTGCTGAATTAAAAATGGG

Basic information

species Glycine max
transcript GLYMA16G19350.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19350.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g55140.1 (Oryza sativa), 3'ss of exon 3
gttcatatgacactttgaatgtatatgatatgtgattattgttcctagttctgtagttgcttggggtgcagttggccagtttcatatctgtgagggaattttgtttctctaaaattgatcagtgcttgatgatttgtttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTTTCACTGCTAAAATATTAAATGCCGAGCAATGTGCTGAATTAAAAATGGG
                                             || |||| | |||    |     |||| |  |   | ||||     || |  ||| || |  | |   |||  ||| | ||   | || |  ||    |||  ||| | || || |||||| | || ||||||||||| ||||||||||| |||||||| | ||||||| |||  ||| |||||   || ||||| |||||
------------------------------------------gtatatttcttttgttaaacgccaaacagtggatctcctccata-----gatgccattctgatgttttcttatt--tcactactcactcatctcctttatccagCTGTGCTTGCCGAGGAGGCATCAAACATTGCTTCTACATACAGTGATGTATTCACTGCGACAATATTAGATGTGGAGAAATGTAAAGAGTTAAAGATGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16995895|gb|BM085267.1|BM085267
EST:     TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAG                         GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
EST: gi|208247826|gb|GE045326.1|GE045326
EST:     TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAG                         GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
EST: gi|151394372|gb|EV264243.1|EV264243
EST:     TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACTAG                         GGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT
genomic: TATCTTTGGAAGGGAGCTTGTAAATTCTCCTGCTAATGTGCTCACACCAGgttcatatga ... tttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagggaattttgtttctctaaaattgatcagtgcttgatgatttgtttacctcagGGGTGTTGGCAGAAGAGGCAGCTAAGATTGCTTCTACCTACAGTGATGTTTTCACTGCTAAAATATTAAATGCCGAGCAATGTGCTGAATTAAAAATGGG
                                             tttacctc  CT-rich tract
     aattttgttt  TA-rich tract