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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttggcagttggcatcatacttcttaaattacttttatggtctattgtgtttgtttcctatttgtttttcctggatgcggagggggaagtgggatacatagattggtttattatatcagttattgaattctaaggtcattgcgttaatttatacttttcagAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGAATGTTGCTCGTGCATATCGCGTTTATT

Basic information

species Glycine max
transcript GLYMA16G19320.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19320.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv08s0105g00550.t01 (Vitis vinifera), 3'ss of exon 5
gtgcttggcagttggcatcatacttcttaaattacttttatggtctattgtgtttgtttcctatttgtttttcctggatgcggagggggaagtgggatacatagattggttt---attatatcagttattgaattctaaggtca--ttgcgttaatttatacttt------tcagAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGAATGTTGCTCGTGCATATCGCGTTTATT----------------------
                                                 ||  | ||||   ||| | |||  | ||     |    | |||     ||| || | | |||    ||  |   ||  | ||  |    |  | |  |||  ||  |||||  |||       |||| || ||||| || ||||||||||||||||||| ||| ||||||||   ||| | ||||||||| ||||| |||||||                      
-------------------------------------------------gtact-gttttagattggatttctcaggccattgtaaagaaagcat--tacttaaaatagttgcaaatgcttctagaaactgtgtggctaaattaatttgttttgctttatcttttactgacccagAGTTCCATCCCAACTTAATTGGATTAACTGGTAACCCGGATGAGGTGCGGAAAGCTGCTCGTGCTTATCGAGTTTATTATATGAAGACAGAAGAGGAAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193615392|gb|FK561470.1|FK561470
EST:     TGTTGATCCTGAGAGGGATACTGTTGAACAAGTCGGTGAATATGTCAAAG                         AATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGA
genomic: TATTGATCCTGAGAGGGATATTGTTGAACAAGTCGGTGAATATGTCAAAGgtgcttggca ... tacttttcagAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttattatatcagttattgaattctaaggtcattgcgttaatttatacttttcagAATTTCATCCGAAGTTAATTGGATTAACTGGTAGCCCCGATGAGGTCAAGAATGTTGCTCGTGCATATCGCGTTTATT
                                   cgttaat  putative branch site (score: 4)
                                             tacttttc  putative PPT
                                     ttaatttatacttttc  TA-rich tract