1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaataggaccaaaatgattgtcttttgatgttttattgaccatgtgaatagatcagtttcacacttgtgttatatattccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG
species | Glycine max |
transcript | GLYMA16G19270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|254339193|gb|GR847910.1|GR847910
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|11413592|gb|BF425603.1|BF425603
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCACGAGCTAGCTGAGCAGATCAAGGACATCTCAGAAAEST: gi|192303525|gb|FG995931.1|FG995931
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|38191192|gb|CF920398.1|CF920398
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTCCAGAAGAGGCAGGAGCCAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|33388247|gb|CA851454.1|CA851454
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|254339194|gb|GR847911.1|GR847911
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|254320942|gb|GR827391.1|GR827391
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|7589011|gb|AW704794.1|AW704794
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|254342034|gb|GR853171.1|GR853171
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|254349082|gb|GR860354.1|GR860354
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|14260041|gb|BG882949.1|BG882949
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|27424668|gb|CA936188.1|CA936188
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: TAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|15000946|gb|BI321760.1|BI321760
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|192303524|gb|FG995930.1|FG995930
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAEST: gi|19053736|gb|BM732403.1|BM732403
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
EST: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAG CTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
genomic: GAGGTTTGCAGTGAGGACATCAAAAAGAATTGAAGATATTTCTAACAAAGgtaataggac ... attccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAA
ttttattgaccatgtgaatagatcagtttcacacttgtgttatatattccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG
tattgac putative branch site (score: 2)
ttgtgttatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataggaccaaaatgattgtcttttgatgttttattgaccatgtgaatagatcagtttcacacttgtgttatatattccggcagCTGTTCAGAAGAGGCAGGAGCTAGCTGAGCAGATCAAGGACATCTCAAAAAATATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA