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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttatctatattgtcaatttgtcatttgtttctctacagttataaattcctacaattgttgtaatttttattaatagcttattttcttttgcagGCTTGACTTGTATTTACCTAAAAATAGCAATGGTCCCAAACCAGTTGTTGCTTTTGTTACTGGCGGGGCCTGGATTATTGG

Basic information

species Glycine max
transcript GLYMA16G18930.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18930.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0011g02530.t01 (Vitis vinifera), 3'ss of exon 3
gtatgctttatctatattgtcaatttgtcatttgtttctctacagttataaattcctac--------aattgttgtaattttta---ttaatagcttattttct--tttgcagGCTTGACTTGTATTTACCTAAAAATAGCAATGGTCCCAAACCAGTTGTTGCTTTTGTTACTGGCGGGGCCTGGATTATTGG
||||| | |||   | | |   |||| |  |   |||   | ||   ||   |||||||        | ||  |||| ||  ||   | || |||  ||||| |  | |||||||||||  |||||||||| ||||| ||  |||| || || ||||||||||| ||||| ||||| || ||||||||||||||
gtatg-tgtatggttgtggcttatttcttgtgcatttacatgcaaaaattt-ttcctacctcatcttacttcatgtatttcgtagcatcaagagcagattttttattctgcagGCTTGATCTGTATTTACCCAAAAACAGTGATGGGCCAAAGCCAGTTGTTGCATTTGTAACTGGTGGAGCCTGGATTATTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataaattcctacaattgttgtaatttttattaatagcttattttcttttgcagGCTTGACTTGTATTTACCTAAAAATAGCAATGGTCCCAAACCAGTTGTTGCTTTTGTTACTGGCGGGGCCTGGATTATTGG
                             tattaat  putative branch site (score: 2)
                                      cttattttcttttgc  putative PPT
              aattgttgtaattttt  TA-rich tract