1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagtttggcttgttataagtttactttgttttgccataatatatgtggcttttgacattcaaactatccattcatgttgtgttttatgatgtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTTCGTAACTTTGAAGAGGAAATGAGACAACCAGGGGTTTGGGAGTCGGAA
species | Glycine max |
transcript | GLYMA16G18450.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTEST: gi|120496126|gb|EH224293.1|EH224293
genomic: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATT
EST: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTEST: gi|208196427|gb|GD993126.1|GD993126
genomic: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATT
EST: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTEST: gi|193379481|gb|FK343583.1|FK343583
genomic: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATT
EST: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTEST: gi|16104800|gb|BI892540.1|BI892540
genomic: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATT
EST: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTEST: gi|120495145|gb|EH223312.1|EH223312
genomic: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATT
EST: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTEST: gi|208075195|gb|GD877666.1|GD877666
genomic: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATT
EST: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTEST: gi|193626326|gb|FK573586.1|FK573586
genomic: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCT
EST: CTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTAGTAATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATEST: gi|298195719|gb|HO044110.1|HO044110
genomic: CTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCT-GT-ATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCAT
EST: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTEST: gi|207801239|gb|GD773351.1|GD773351
genomic: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATT
EST: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGG AGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATT
genomic: CCCTTGCCTGTAATAAGGGAAACTCTCTACGACGACGCGATGCTGTATGGgtatgttttg ... gtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATT
tggcttttgacattcaaactatccattcatgttgtgttttatgatgtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTTCGTAACTTTGAAGAGGAAATGAGACAACCAGGGGTTTGGGAGTCGGAA
ttttgac putative branch site (score: 3)
ttttatgatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtttggcttgttataagtttactttgttttgccataatatatgtggcttttgacattcaaactatccattcatgttgtgttttatgatgtttatgcagAGCATCAAGGGCTGGGCATCGTTCACATGAACCGAGCTCCCTAGTTGCATTTCGTAACTTTGAAGAGGAAATGAGACAACCAGGGGTTTGGGAGTCGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - -gcttgtt
- - - - - - - - - - - - - - ttttgcc
- - - - - - - - - - - - - - - - - - - - - - gtggctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - acattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtg