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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttgaacctgccctcgttctgttcataacccttataatattccttggtcatacatctaactatctggataaacaatgcagGAAAGGAGCCCTGTTCTCTCTTACACAGAAGTTTTACTTGTACCCTTGACGACTCCTGATTTCAGTATGCCATACAATGTCATCACAATTACATGCACAG

Basic information

species Glycine max
transcript GLYMA16G18380.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7234325|gb|AW569664.1|AW569664
EST:     AATTTTCTGATAAATCTCAAAGCAAGTCACCACTATTGTCTAAATTACAG                         GAAAGGAGCCCTGTTCTCTCTTACACAGAAGTTTTACTTGTACCCTTGACG
genomic: AATTTTCTGATAAATCTCAAAGCAAGTCACCACTATTGTCTAAATTACAGgttatttgaa ... aacaatgcagGAAAGGAGCCCTGTTCTCTCTTACACAGAAGTTTTACTTGTACCCTTGACG
EST: gi|209706363|gb|BW676325.1|BW676325
EST:     AATTTTCTGATAAATCTCAAAGCAAGTCACCACTATTGTCTAAATTACAG                         GAAAGGAGCCCTGTTCTCTCTTACACAGAAGTTTTACTTGTACCCTTGACG
genomic: AATTTTCTGATAAATCTCAAAGCAAGTCACCACTATTGTCTAAATTACAGgttatttgaa ... aacaatgcagGAAAGGAGCCCTGTTCTCTCTTACACAGAAGTTTTACTTGTACCCTTGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacccttataatattccttggtcatacatctaactatctggataaacaatgcagGAAAGGAGCCCTGTTCTCTCTTACACAGAAGTTTTACTTGTACCCTTGACGACTCCTGATTTCAGTATGCCATACAATGTCATCACAATTACATGCACAG
                            atctaac  putative branch site (score: 2)
      ttataatattcctt  TA-rich tract