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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagaataatttatttaatttaattttcttgtaatggatacttaaaatgttaaaattgtgtagGTTCTTCTATCTATATGCTCTCTACTAACAGACCCCAACCCAGATGATCCTCTGGTGCCCGAGATTGCTCAAATGTATAAGACTAACAGAACCAAGTATG

Basic information

species Glycine max
transcript GLYMA16G17760.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17760.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 4
----gtaaaagaataatttattt-----aatttaattttcttgtaatggatacttaaa-atgttaaaattgt-----gtagGTTCTTCTATCTATATGCTCTCTACTAACAGACCCCAACCCAGATGATCCTCTGGTGCCCGAGATTGCTCAAATGTATAAGACTAACAGAACCAAGTATG
     ||  || || |  |  ||     | |||     |  ||| |    |  | ||   |||||  |||         |||| || || || || || || || || || ||||| ||||| ||||||||  ||||||| ||||||||||| ||||| |||||| | ||  |||||||||
gtaattatcagcatgacctgatttcaacattttggcccttctgtgacacctgatgaattgtgttatcattaattctaacagGTCCTCCTGTCAATTTGTTCACTGCTGACGGACCCGAACCCCGATGATCCGTTGGTGCCGGAGATTGCTCACATGTACAAGACTGATAGGGCCAAGTATG

upper sequence: GLYMA16G17760.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G102471_T03 (Zea mays), 3'ss of exon 3
----------------------------------gtaaaagaataatttatttaatttaattttcttgtaatggatacttaaaatgttaaaattgtgtagGTTCTTCTATCTATATGCTCTCTACTAACAGACCCCAACCCAGATGATCCTCTGGTGCCCGAGATTGCTCAAATGTATAAGACTAACAGAACCAAGTATG
                                       |||| | | | || ||  || |||| |     |    |  |    ||||     |    ||||||| || || || ||||| || || || ||||| ||||| ||||||||||| || || ||||||||||| ||||| |||||  ||||  |||||||||
ttgtggttagctaatatgatattgtggttatgttccttgagaacagtatgttcaagatagttttgtctgtttactgatctgttctgttctgtattaacagGTTCTCCTGTCAATCTGCTCACTGCTCACGGACCCAAACCCTGATGATCCTCTTGTCCCTGAGATTGCTCACATGTACAAGACCGACAGGGCCAAGTATG

upper sequence: GLYMA16G17760.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G102471_T05 (Zea mays), 3'ss of exon 4
-----------------gtaaaagaataatttatttaatttaattttcttgtaatggatacttaaaatgttaaaattgtgtagGTTCTTCTATCTATATGCTCTCTACTAACAGACCCCAACCCAGATGATCCTCTGGTGCCCGAGATTGCTCAAATGTATAAGACTAACAGAACCAAGTATG-----------------
                      |||| | | | || ||  || |||| |     |    |  |    ||||     |    ||||||| || || || ||||| || || || ||||| ||||| ||||||||||| || || ||||||||||| ||||| |||||  ||||  |||||||||                 
gatattgtggttatgttccttgagaacagtatgttcaagatagttttgtctgtttactgatctgttctgttctgtattaacaggttctcctgtcaatctgCTCACTGCTCACGGACCCAAACCCTGATGATCCTCTTGTCCCTGAGATTGCTCACATGTACAAGACCGACAGGGCCAAGTATGAGTCCACCGCACGCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatttaatttaattttcttgtaatggatacttaaaatgttaaaattgtgtagGTTCTTCTATCTATATGCTCTCTACTAACAGACCCCAACCCAGATGATCCTCTGGTGCCCGAGATTGCTCAAATGTATAAGACTAACAGAACCAAGTATG
         atttaat  putative branch site (score: 4)
     tttaatttaattttct  TA-rich tract