Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgaaataatttatttaatttaattttcttgtaatggatacttaaaatgttaaaattgtgtagGTTCTTCTATCTATATGCTCTTTGCTGACAGACCCCAACCCAGATGATCCTCTAGTGCCTGAGATTGCTCAAATGTACAAGACTAACAGAGCCAAGTATC

Basic information

species Glycine max
transcript GLYMA16G17740.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17740.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g57220.1 (Oryza sativa), 3'ss of exon 4
---------gtaacgaaataatttatttaatttaattttcttgtaatggatacttaaa-atgttaaaattgt-----gtagGTTCTTCTATCTATATGCTCTTTGCTGACAGACCCCAACCCAGATGATCCTCTAGTGCCTGAGATTGCTCAAATGTACAAGACTAACAGAGCCAAGTATC
            | ||  | ||||    | |||     |  ||| |    |  | ||   |||||  |||         |||| || || || || || ||  ||||||| ||||| ||||| ||||||||  | ||||| ||||||||||| |||||||||||| | || ||||||||| 
gtaattatcagcatgacctgatttcaacattttggcccttctgtgacacctgatgaattgtgttatcattaattctaacagGTCCTCCTGTCAATTTGTTCACTGCTGACGGACCCGAACCCCGATGATCCGTTGGTGCCGGAGATTGCTCACATGTACAAGACTGATAGGGCCAAGTATG

upper sequence: GLYMA16G17740.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G102471_T03 (Zea mays), 3'ss of exon 3
----------------------------------gtaacgaaataatttatttaatttaattttcttgtaatggatacttaaaatgttaaaattgtgtagGTTCTTCTATCTATATGCTCTTTGCTGACAGACCCCAACCCAGATGATCCTCTAGTGCCTGAGATTGCTCAAATGTACAAGACTAACAGAGCCAAGTATC
                                         || | | | || ||  || |||| |     |    |  |    ||||     |    ||||||| || || || |||||  |||| || ||||| ||||| ||||||||||| || |||||||||||||| |||||||||||  |||| ||||||||| 
ttgtggttagctaatatgatattgtggttatgttccttgagaacagtatgttcaagatagttttgtctgtttactgatctgttctgttctgtattaacagGTTCTCCTGTCAATCTGCTCACTGCTCACGGACCCAAACCCTGATGATCCTCTTGTCCCTGAGATTGCTCACATGTACAAGACCGACAGGGCCAAGTATG

upper sequence: GLYMA16G17740.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G102471_T05 (Zea mays), 3'ss of exon 4
-----------------gtaacgaaataatttatttaatttaattttcttgtaatggatacttaaaatgttaaaattgtgtagGTTCTTCTATCTATATGCTCTTTGCTGACAGACCCCAACCCAGATGATCCTCTAGTGCCTGAGATTGCTCAAATGTACAAGACTAACAGAGCCAAGTATC-----------------
                        || | | | || ||  || |||| |     |    |  |    ||||     |    ||||||| || || || |||||  |||| || ||||| ||||| ||||||||||| || |||||||||||||| |||||||||||  |||| |||||||||                  
gatattgtggttatgttccttgagaacagtatgttcaagatagttttgtctgtttactgatctgttctgttctgtattaacaggttctcctgtcaatctgCTCACTGCTCACGGACCCAAACCCTGATGATCCTCTTGTCCCTGAGATTGCTCACATGTACAAGACCGACAGGGCCAAGTATGAGTCCACCGCACGCTCC

upper sequence: GLYMA16G17740.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0015g01190.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------gtaacgaaataatttatttaatt--taattttcttgtaatggatacttaaaatgttaaaattgtgtagGTTCTTCTATCTATATGCTCTTTGCTGACAGACCCCAACCCAGATGATCCTCTAGTGCCTGAGATTGCTCAAATGTACAAGACTAACAGAGCCAAGTATC
                                   |   | |  ||   |     |    ||||    ||||  |   || ||  |||| |       || ||||  | || |||||||||||  ||||||| || || ||||| ||||||||  | ||||| || ||||| || |||||||||||  |||||||||| ||| 
ttttatttaccagtgaaagaaacagctgggacatagaggccatttagggtgccagaacagtaatgagtttgtgctctgtattttcaatgctgg---cctgcagGTGTTGCTCTCTATATGCTCGCTGCTGACGGATCCAAACCCGGATGATCCCTTGGTGCCAGAAATTGCCCACATGTACAAGACCGACAGAGCCAAATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttatttaatttaattttcttgtaatggatacttaaaatgttaaaattgtgtagGTTCTTCTATCTATATGCTCTTTGCTGACAGACCCCAACCCAGATGATCCTCTAGTGCCTGAGATTGCTCAAATGTACAAGACTAACAGAGCCAAGTATC
         atttaat  putative branch site (score: 4)
     tttaatttaattttct  TA-rich tract