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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtcatcggaagatcattgcattatgctccttcaatgcttaatttcattacttgttgttgaaggaagtaaacttgacttttgcatcctttattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGACACATTTTGTATTTTGTTGGGTCGGAGGCGAAGCTCTTGTTTTCACAGT

Basic information

species Glycine max
transcript GLYMA16G17640.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304574|gb|FG997918.1|FG997918
EST:     CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAG                         GGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGA
genomic: CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAGgtattgtttt ... tattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGA
EST: gi|298190599|gb|HO032720.1|HO032720
EST:     CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAG                         GGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGA
genomic: CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAGgtattgtttt ... tattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGA
EST: gi|31473717|gb|CD415745.1|CD415745
EST:     CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAG                         GGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATATTTTTG
genomic: CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAGgtattgtttt ... tattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACAT-TTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattacttgttgttgaaggaagtaaacttgacttttgcatcctttattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGACACATTTTGTATTTTGTTGGGTCGGAGGCGAAGCTCTTGTTTTCACAGT
                          acttgac  putative branch site (score: 4)
                                cttttgcatccttt  CT-rich tract
                                           tttatttt  TA-rich tract