1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttgtcatcggaagatcattgcattatgctccttcaatgcttaatttcattacttgttgttgaaggaagtaaacttgacttttgcatcctttattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGACACATTTTGTATTTTGTTGGGTCGGAGGCGAAGCTCTTGTTTTCACAGT
species | Glycine max |
transcript | GLYMA16G17640.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAG GGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGAEST: gi|31473717|gb|CD415745.1|CD415745
genomic: CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAGgtattgtttt ... tattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGA
EST: CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAG GGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATATTTTTG
genomic: CAGTAAAAGTATACAAGCATTCCGTAACCAAATATTCAGCTCTCATAAAGgtattgtttt ... tattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACAT-TTTTTG
tcattacttgttgttgaaggaagtaaacttgacttttgcatcctttattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGACACATTTTGTATTTTGTTGGGTCGGAGGCGAAGCTCTTGTTTTCACAGT
acttgac putative branch site (score: 4)
cttttgcatccttt CT-rich tract
tttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtcatcggaagatcattgcattatgctccttcaatgcttaatttcattacttgttgttgaaggaagtaaacttgacttttgcatcctttattttgcagGGAAAGATTGATGACTTCCACCACTGTCAGTTTTGTGCTTACATTTTTTGACACATTTTGTATTTTGTTGGGTCGGAGGCGAAGCTCTTGTTTTCACAGT
-tgtcatc
- - - - - - - - - tgcatta
- - - - - - - - - - - - - -ctccttc
- - - - - - - - - - - - - - - - - aatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatcc