1 5' 3' | 2 5' 3' | 3 5' 3' |
...tattaggttttgaatgaacactttctcaactaatatttgtttagactttatatgcttattagattttgaattaacactttctcaactcttatgtttgcagCCGGGAAAGATTTGGGGAGGTGAATGCAAAAACTTGGTGGGAAGAGAACAGAGAGAGAATCCAAGCTCAATATCTTTGAACTTTGAAGTCAAATTTTTCT
species | Glycine max |
transcript | GLYMA16G17590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCAGGCAGTTAGCTGATGGAACTAGGGAGCTTAGACGTGTCAGATTCAG CCGGGAAAGATTTGGGGAGGTGAATGCAAAAACTTGGTGGGAAGAGAACAGEST: gi|193421830|gb|FK387945.1|FK387945
genomic: ATCAGGCAGTTAGCTGATGGAACTAGGGAGCTTAGACGTGTCAGATTCAGgtactataca ... atgtttgcagCCGGGAAAGATTTGGGGAGGTGAATGCAAAAACTTGGTGGGAAGAGAACAG
EST: ATCAGGCAGTTAGCTGATGGAACTAGGGAGCTTAGACGTGTCAGATTCAG CCGGGAAAGATTTGGGGAGGTGAA
genomic: ATCAGGCAGTTAGCTGATGGAACTAGGGAGCTTAGACGTGTCAGATTCAGgtactataca ... atgtttgcagCCGGGAAAGATTTGGGGAGGTGAA
ctttatatgcttattagattttgaattaacactttctcaactcttatgtttgcagCCGGGAAAGATTTGGGGAGGTGAATGCAAAAACTTGGTGGGAAGAGAACAGAGAGAGAATCCAAGCTCAATATCTTTGAACTTTGAAGTCAAATTTTTCT
aattaac putative branch site (score: 2)
ctcttat putative PPT
ttattagattttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattaggttttgaatgaacactttctcaactaatatttgtttagactttatatgcttattagattttgaattaacactttctcaactcttatgtttgcagCCGGGAAAGATTTGGGGAGGTGAATGCAAAAACTTGGTGGGAAGAGAACAGAGAGAGAATCCAAGCTCAATATCTTTGAACTTTGAAGTCAAATTTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - -ggttttg
- - - - - - aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - tatatgc