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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattataaggtgctgtttaattactctgatttctgatgatcactattaatatatttttacaatttgaatcatttgtgcatattttaattagGTTCTGGATGAAATTCACCTGCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGACCTGTTCCTGCACCTAATGATGTTGTCGATTCCT

Basic information

species Glycine max
transcript GLYMA16G17110.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17110.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G45290.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaattataaggtgctg-tttaattactc-tgatttctgatgatcactattaatatatttttacaatttgaatcatttgtgcatattttaattagGTTCTGGATGAAATTCACCTGCAATCTGTTGTTTTATCTTCCCGCC---CATCTGTATCTTCTATTGGACCTGTTCCTGCACCTAATGATGTTGTCGATTCCT
|||| || | | |   | | |   ||||      || |    |  |   ||  |     | ||   |  | |||    ||||||   ||  ||||||||| ||||||||||| | |||||||||||| ||||| || |  |   |||| ||||| ||||| ||| |||||||||||||||| || ||||| ||||   
gtaaatacatgttttcggtctccctactaacagctttttgccactatctttctttctcatgtatgctaaggatctacagtgcattcatt--ttagGTTCTTGATGAAATTCATCAGCAATCTGTTGTCTTATCCTCTCAACAACCATCAGTATCATCTATAGGATCTGTTCCTGCACCTAACGACGTTGTGGATT---

upper sequence: GLYMA16G17110.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0087g00420.t01 (Vitis vinifera), 3'ss of exon 3
gtaattataaggtgctgtttaattactctgatttctgatgatcactattaatatatttt-----tacaatttga-atcatttgtgcatattttaat-----tagGTTCTGGATGAAATTCACCTGCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGACCTGTTCCTGCACCTAATGATGTTGTCGATTCCT
          | ||||  |  |||| | |  ||| ||||| ||||| ||    ||||||     ||  |||  | || | |||    | |||| ||     |||||||||||||||||||||| ||||||||| || ||||| ||||| || |||||||||||||||||  |||||||||| || ||||| ||||| || || |
--------gtgatgctaatatattattatattttgtgatggtcacttttccagtattttctttgtatcattcaatataagttgaatttttttttatacctatagGTTCTGGATGAAATTCACCAGCAATCTGTGGTCTTATCGTCCCGACCTTCTGTATCTTCTATTGGTTCTGTTCCTGCTCCAAATGAAGTTGTAGAATCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatcactattaatatatttttacaatttgaatcatttgtgcatattttaattagGTTCTGGATGAAATTCACCTGCAATCTGTTGTTTTATCTTCCCGCCCATCTGTATCTTCTATTGGACCTGTTCCTGCACCTAATGATGTTGTCGATTCCT
       tattaat  putative branch site (score: 2)
     actattaatatatttt  TA-rich tract