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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgactattcttatctagtttttcccatgcatatatgtgtatcttttgtgtattaatttttttaatgcttcgttgcttctttctcctgtcactttcctattgtgatctcagTGAAGCAAAAGGTAGTTTTGCATTGACTGCCTCCCCTCATGGTGACTCTGTTGACAGTAGTGCTAGACCCGGGGCTCCTTTGGCCAGTGAGCCTAATACT

Basic information

species Glycine max
transcript GLYMA16G14060.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G14060.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0005g06680.t01 (Vitis vinifera), 3'ss of exon 3
gttgactattcttatctagtttttcccatgcatatatgtgtatcttttgtgtattaatttttttaatgcttcgttgcttctttctcctgtcactttcctattgtgatctcagTGAAGCAAAAGGTAGTTTTGCATTGACTGCCTCCCCTCATGGTGACTCTGTTGACAGTAGTGCTAGACCCGGGGCTCCTTTGGCCAGTGAGCCTAATACT
                || | ||||  ||  ||  |  |  |    ||||| || |            || | ||  || | |        |   |  | |||| |   ||||||||||||||| |||||||| ||||||||||| |||||||| || |||||||| |||||||  ||||| ||||  |||   |   |||| || |||| |
--------------gttattctttcttatagatgcaaattaaaaaattgtggatgac-----------ctgcattatttttattgaactagatgatgttcttgtaa---cagTGAAGCAAAAGGCAGTTTTGCGTTGACTGCCTCACCTCATGGCGATTCTGTTGAAAGTAGTGGCAGACCAGGGGGGCCTACAGTTTGTGAACCAAATAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttaatgcttcgttgcttctttctcctgtcactttcctattgtgatctcagTGAAGCAAAAGGTAGTTTTGCATTGACTGCCTCCCCTCATGGTGACTCTGTTGACAGTAGTGCTAGACCCGGGGCTCCTTTGGCCAGTGAGCCTAATACT
   ttttaat  putative branch site (score: 3)
                   cttctttctcctgtca  putative PPT
     ttaat  TA-rich tract