Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaaatctcattttatttgttcatgtgatgaggaatcatctactcacttagttttgttgatcatgttcttgcatattatatattcactcgtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG

Basic information

species Glycine max
transcript GLYMA16G10750.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G10750.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os09g32526.1 (Oryza sativa), 3'ss of exon 3
ttcaaatct--cattttatttgttcatgtgatgaggaatcatctactcacttagttttgttgatcatgttcttgcatattatatattcactcgt--gtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG
   || | |   ||| |  |   |    || |  |   | || ||||  | |   ||| || || | |    |   |    |    ||  || |   ||| ||||||||||| ||||||||||| | ||| |||||||||| |||||||  | | ||||| ||||||||| | || ||||| |||||||||||||
-gtaagtttgatattctgctgtatggcctgttttgtttttatttactggcatcactttatttatgaagcctgtagttcacttggcctctgtcatccatttacagGGAAAACTTACTGATGGAACAGATTTTGATTCTAGCTATGAAAGAGGTGACCCAATCGAATTTGAGTTGGGCACTGGCCAAGTGATCAAAG

upper sequence: GLYMA16G10750.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G115757_T02 (Zea mays), 3'ss of exon 3
ttcaaatctcattttatttgttcatgtgatgagga-atcatctactcacttagttttgttgatcatgttcttgcatattatat--attcact----cgtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG
       | |  |  ||| ||||| |  ||   || |  |   | | |||| ||  |    || |   ||||     |||| |  | |  ||      | ||| ||||||||||| ||||||||||| ||||| ||||| |||| |||||||  | | || |||||||||||  | || ||||| |||||||||||||
------ccaccctacattggttcaagaaattgtgatactagacaat-acttggtgatcacaataactatcttctgagttatgttcacttgctgtgatttttttacagGGAAAACTTACTGATGGAACGGTTTTTGATTCAAGCTATGAAAGAGGTGACCCGATTGAATTTGAATTGGGCACTGGACAAGTGATCAAAG

upper sequence: GLYMA16G10750.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G153991_T01 (Zea mays), 3'ss of exon 3
----ttcaaatctcattttatttgttcatgtgatgaggaatcatctactcacttagttttgttgatcatgttcttgcatattatatattcactcgtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG
     | |||   || |     |    |  | |   | | |  |||  |  ||   |||   |     |||| ||  |  | | |   |   |  || | |||||| | ||||||||||||| | |||||||||||||||| ||| |||  | | ||  |||||||    ||||| | ||| |||||||| ||||
ttcgattaaaaagcactcctcgtcgatactttacctgcagt-gtctctttcctctttttaactctctttgttatt-tagctgaaaggcttgat-atgct-gcagGGGACACTCACTGATGGATCAGTTTTCGATTCTAGCTATGACAGAGGTGACCCGTTTGAATTCACTCTTGGAAATGGCCAAGTGATAAAAG

upper sequence: GLYMA16G10750.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G48580.1 (Arabidopsis thaliana), 3'ss of exon 4
ttcaaatctcattttatttgttcatgtgatgaggaatcatc-tactcacttagttttgttgatcatgttcttgcatattatata-ttcactcgtgttt----gcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG
 | |  | |   |  || |  | |    ||  ||| ||||  |  |||   ||   |||| ||  |  | ||   | || | ||  | | |  ||||     |||||| ||||| |||||||||||||| |||||||| || ||||||||   | ||||  |||| ||| |  | || | |||||| || |||||||
gtaagtttttgctagatcttataacaaaattgggattcattattgtcatgaagaaatgtttattgttgtttttgttgttgtgtaacttagtgttgttatgtggcagGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAG

upper sequence: GLYMA16G10750.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0260g00060.t01 (Vitis vinifera), 3'ss of exon 3
ttcaaatctcattttatttgttcatg--tgatgaggaatca-tctactcacttagttttgttgatcatgttcttgcatattata--tattcactcgtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG
          | ||||   |||| |   ||||        | |   | || || | ||| |     || | |||   |  | |   | ||   |  | || |||||| |||||||| |||||||||||||| ||||| || ||||||||   | | |||||||| ||||| ||||||| ||| ||||| || ||||
-----tgtgtactttagcagttcgtaattgatttttgccaaatgctcccattttggtttttcctatatttccttaactgatgtgagtttttgattatcttggcagGGGAAACTCACAGATGGAACTGTTTTTGATTCCAGTTTTGAAAGGGGTGACCCAATTGAGTTTGAACTTGGTAGTGGCCAAGTAATTAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312663|gb|BG406314.1|BG406314
EST:     CATGTGAAGTT-AGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|298193329|gb|HO033763.1|HO033763
EST:     CACGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|27423853|gb|CA935373.1|CA935373
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|298175734|gb|HO018331.1|HO018331
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|24135582|gb|BU926092.1|BU926092
EST:     CATGTGAAGTTTAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|27427266|gb|CA938786.1|CA938786
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|192324946|gb|FK016117.1|FK016117
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|192297771|gb|FG989977.1|FG989977
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|26267833|gb|CA818896.1|CA818896
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|298198249|gb|HO039788.1|HO039788
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|298170036|gb|HO018660.1|HO018660
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|192315333|gb|FK009625.1|FK009625
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|193634963|gb|FK585298.1|FK585298
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAA
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAA
EST: gi|14011654|gb|BG726576.1|BG726576
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|151407606|gb|EV277421.1|EV277421
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|298187400|gb|HO034549.1|HO034549
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|208192023|gb|GD990599.1|GD990599
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|192327623|gb|FK020656.1|FK020656
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|209726138|gb|BW675313.1|BW675313
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|208210805|gb|GE009122.1|GE009122
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAA
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAA
EST: gi|4283975|gb|AI440723.1|AI440723
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|6747607|gb|AW318120.1|AW318120
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAGATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|6847379|gb|AW349669.1|AW349669
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|22526013|gb|BU084824.1|BU084824
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|193426720|gb|FK391315.1|FK391315
EST:     TGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTG-TTTCGATCCTAGCTTTGAAAGAAATAAT
genomic: TGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|208235723|gb|GE033745.1|GE033745
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAA
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAA
EST: gi|31461364|gb|CD403392.1|CD403392
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|7146975|gb|AW508897.1|AW508897
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|12774035|gb|BG238962.1|BG238962
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAGATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|207776702|gb|GD748764.1|GD748764
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|193523670|gb|FK480967.1|FK480967
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|193660662|gb|FK606386.1|FK606386
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAA
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAA
EST: gi|209700346|gb|BW664383.1|BW664383
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|207767557|gb|GD739297.1|GD739297
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAA
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAA
EST: gi|38192531|gb|CF921737.1|CF921737
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|298162996|gb|HO011729.1|HO011729
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|192304037|gb|FG993881.1|FG993881
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|209700345|gb|BW664382.1|BW664382
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|209726139|gb|BW675314.1|BW675314
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|10845833|gb|BF068875.1|BF068875
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|27423836|gb|CA935356.1|CA935356
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|15203525|gb|BI426293.1|BI426293
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|7589192|gb|AW704971.1|AW704971
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|11413630|gb|BF425641.1|BF425641
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|14990944|gb|BI316617.1|BI316617
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|17402092|gb|BM178874.1|BM178874
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|9899664|gb|BE608632.1|BE608632
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|31475040|gb|CD417068.1|CD417068
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|151402182|gb|EV271995.1|EV271995
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAGACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|298185920|gb|HO031081.1|HO031081
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|192325979|gb|FK016656.1|FK016656
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|213601554|gb|DB972346.1|DB972346
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|298166273|gb|HO009244.1|HO009244
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAGGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|9902932|gb|BE611900.1|BE611900
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|20498677|gb|BQ273607.1|BQ273607
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|38193858|gb|CF923064.1|CF923064
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|5509520|gb|AI856078.1|AI856078
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|254347228|gb|GR856898.1|GR856898
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|7692067|gb|AW760182.1|AW760182
EST:     GTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: GTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|9901330|gb|BE610298.1|BE610298
EST:     CATGTGAAGTTC-GGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|14195946|gb|BE657760.2|BE657760
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|13481192|gb|BG510535.1|BG510535
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|208185008|gb|GD984980.1|GD984980
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGG
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGG
EST: gi|208246223|gb|GE048385.1|GE048385
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|192295117|gb|FG986836.1|FG986836
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATCGG                         GGAAAACTCACTGATGGAACTGTTTTTGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|192328912|gb|FK019667.1|FK019667
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|42722852|gb|CK768751.1|CK768751
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
EST: gi|13181466|gb|BG352806.1|BG352806
EST:     CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGG                         GGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT
genomic: CATGTGAAGTTCAGGCACACAAAGGTGACAGAGTCAAAGTACACTATAGGgtgagtaatt ... gtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttagttttgttgatcatgttcttgcatattatatattcactcgtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG
                        ttgcatattatatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttcaaatctcattttatttgttcatgtgatgaggaatcatctactcacttagttttgttgatcatgttcttgcatattatatattcactcgtgtttgcagGGAAAACTCACTGATGGAACTGTTTTCGATTCTAGCTTTGAAAGAAATAATCCAATTGAATTTGAGCTTGGTACTGGTCAAGTGATCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - -tcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatat