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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcactatatttcaaattttggtgcctaatcataaatgatttagattttaatgacaatttgtcttcttgcagTGTCTTTGTGAACTTCCAGAGACCTATGAGGCATATAAGAAACAACAACACCGCTGGCATTCTGGTCCAATGCAATTGTTTCGCTTGTGTTTTCTTGATA

Basic information

species Glycine max
transcript GLYMA16G10680.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687350|gb|BF594990.1|BF594990
EST:     TGTATTTCTCAATGATGTTAAG                         TGTCTTTGTGAACTTCCAGAGACCTATGAGGCATATAAGAAACAACAACAC
genomic: TGTATTTCTCAATGATGTTAAGgtgcactata ... cttcttgcagTGTCTTTGTGAACTTCCAGAGACCTATGAGGCATATAAGAAACAACAACAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtgcctaatcataaatgatttagattttaatgacaatttgtcttcttgcagTGTCTTTGTGAACTTCCAGAGACCTATGAGGCATATAAGAAACAACAACACCGCTGGCATTCTGGTCCAATGCAATTGTTTCGCTTGTGTTTTCTTGATA
                            ttttaat  putative branch site (score: 3)
                                        tttgtcttctt  putative PPT
         taatcataaatgattt  TA-rich tract