1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gcaagattattagaatgtacatgctgagcacatataaagctgtcttgtttggtagtaaaatttaattactattttcctgcttgttccaaaaacagGTTAGAATTTTGGATGATGATATTCCCCTTGCACAATTTGCCGTAGCTTTTGAAGGTGCTGCTTGGACAGATCCCGATTCCGTTGCTCTGATGGTCATGC
species | Glycine max |
transcript | GLYMA16G10360.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGCTTCTCAATTAGTTGCAAAAGAACCAGCCA-TTTTACCGTTTCTGAG GTTAGAATTTTGGATGATGATATTCCCC-TGCACAAATTTGCCGTAGCTTTEST: gi|9820205|gb|BE555715.1|BE555715
genomic: CAGCTTCTCAATTAGTTGCAAAAGAACCAGCCATTTTTACCGGTTCTGAGgcaagattat ... ccaaaaacagGTTAGAATTTTGGATGATGATATTCCCCTTGCAC-AATTTGCCGTAGCTTT
EST: CAGCTTCTCAATTAGTTGCAAAAGAACCAGCCATTTTTACCGGTTCTGAG GTTAGAATTTTGGATGATGATATTCCCCTTGCACAATTTGCCGTAGCTTTTEST: gi|6667589|gb|AW279040.1|AW279040
genomic: CAGCTTCTCAATTAGTTGCAAAAGAACCAGCCATTTTTACCGGTTCTGAGgcaagattat ... ccaaaaacagGTTAGAATTTTGGATGATGATATTCCCCTTGCACAATTTGCCGTAGCTTTT
EST: GCCATTTTTACCGGTTCTGAG GTTAGAATTTTGGATGATGATATTCCCCTTGCACAATTTGCCGTAGCTTTT
genomic: GCCATTTTTACCGGTTCTGAGgcaagattat ... ccaaaaacagGTTAGAATTTTGGATGATGATATTCCCCTTGCACAATTTGCCGTAGCTTTT
tgtcttgtttggtagtaaaatttaattactattttcctgcttgttccaaaaacagGTTAGAATTTTGGATGATGATATTCCCCTTGCACAATTTGCCGTAGCTTTTGAAGGTGCTGCTTGGACAGATCCCGATTCCGTTGCTCTGATGGTCATGC
atttaat putative branch site (score: 4)
ttttcctgcttgttcc putative PPT
tttggtagtaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagattattagaatgtacatgctgagcacatataaagctgtcttgtttggtagtaaaatttaattactattttcctgcttgttccaaaaacagGTTAGAATTTTGGATGATGATATTCCCCTTGCACAATTTGCCGTAGCTTTTGAAGGTGCTGCTTGGACAGATCCCGATTCCGTTGCTCTGATGGTCATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT