1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...accaaacaaatcctacctgatttacatatgtaacttcttgtattcttatagaaaggttttgtatcgtttagtagcataatgcactttgtgttacttgcagGATTCCATGATTTGTGCTAATGACTTTTTCAAGTACCTCTGCAACTGGGTTCTGGTACATTGCTCTGAAGAAATGACGTTCGTTGCCAAAAGAATCGACA
species | Glycine max |
transcript | GLYMA16G09690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGAAATGTGGATGATCGAGGTTGAAATGGCCTTTTCGCAATTGAAG GATTCCATGATTTGTGCTAATGACTTTTTCAAGTACCTCTGCAACTGGGTT
genomic: CTGCAGAAATGTGGATGATCGAGGTTGAAATGGCCTTTTCGCAATTGAAGgtatcacttc ... ttacttgcagGATTCCATGATTTGTGCTAATGACTTTTTCAAGTACCTCTGCAACTGGGTT
ttatagaaaggttttgtatcgtttagtagcataatgcactttgtgttacttgcagGATTCCATGATTTGTGCTAATGACTTTTTCAAGTACCTCTGCAACTGGGTTCTGGTACATTGCTCTGAAGAAATGACGTTCGTTGCCAAAAGAATCGACA
ttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accaaacaaatcctacctgatttacatatgtaacttcttgtattcttatagaaaggttttgtatcgtttagtagcataatgcactttgtgttacttgcagGATTCCATGATTTGTGCTAATGACTTTTTCAAGTACCTCTGCAACTGGGTTCTGGTACATTGCTCTGAAGAAATGACGTTCGTTGCCAAAAGAATCGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
-ccaaaca
- - - - - -cctacct
- - - - - - - - - - - - catatgt
- - - - - - - - - - - - - - - - -cttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcac