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gtaaatgagtcaacttcttggacacaaaatgtgtaatttctaccaaatgagtcttccaatttttttttcttttcttctcttaaacttttcctgattttttttgtttttaccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT
species | Glycine max |
transcript | GLYMA16G08470.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAG GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATEST: gi|24135790|gb|BU926300.1|BU926300
genomic: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAGgtaaatgagt ... taccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACAT
EST: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAG GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATEST: gi|298166108|gb|HO009079.1|HO009079
genomic: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAGgtaaatgagt ... taccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACAT
EST: CCCAGAACCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAG GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATEST: gi|298179589|gb|HO026970.1|HO026970
genomic: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAGgtaaatgagt ... taccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACAT
EST: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAG GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATEST: gi|19345789|gb|BM890669.1|BM890669
genomic: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAGgtaaatgagt ... taccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACAT
EST: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAG GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATEST: gi|151412168|gb|EV281980.1|EV281980
genomic: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAGgtaaatgagt ... taccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACAT
EST: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAG GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATEST: gi|254340856|gb|GR854584.1|GR854584
genomic: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAGgtaaatgagt ... taccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACAT
EST: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAG GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATEST: gi|151410428|gb|EV280243.1|EV280243
genomic: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAGgtaaatgagt ... taccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACAT
EST: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAG GTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACAT
genomic: CCCAGAATCGAATAAACCTTTTTATGGACCGAATAACTGGCCCGCACCAGgtaaatgagt ... taccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACAT
ttttttcttttcttctcttaaacttttcctgattttttttgtttttaccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT
tcctgat putative branch site (score: 3)
cttttcctgatttttt CT-rich tract
tgattttttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgagtcaacttcttggacacaaaatgtgtaatttctaccaaatgagtcttccaatttttttttcttttcttctcttaaacttttcctgattttttttgtttttaccatgtagGTGTTCTTCCAGGGTGGAGGGAGACCATGGAAAAGTTCCATAGAGAGACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA