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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtctctctcgtttcagtttctacatattcatgtgttttgttaatttatcttttttctggaacacaactccatgcttttgttgcacagaagtgtgtacattaattaaattaatatacaccaggacatagagtaatgtgcacctttataaccttattcatgcagTACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCAAGGTTGGAGGAACTTTTTCCTGTGTTTTAGGTGCTGTACTAATGGTTTTATATCGTGGT

Basic information

species Glycine max
transcript GLYMA16G08380.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15286457|gb|BI470348.1|BI470348
EST:     ATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGG                         TACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCAAGGTTGGAGG
genomic: ATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtctct ... attcatgcagTACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCAAGGTTGGAGG
EST: gi|192323502|gb|FK016393.1|FK016393
EST:     ATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGG                         TACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCA
genomic: ATTCAGCCAGCCACTCCAGTCTTTACTTTTCTGTTGGCTGTAATGATGGGgtcagtctct ... attcatgcagTACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatatacaccaggacatagagtaatgtgcacctttataaccttattcatgcagTACAGAAAGAGTGAACTTGTTAAGATATGACGGTCTGGCCAAGGTTGGAGGAACTTTTTCCTGTGTTTTAGGTGCTGTACTAATGGTTTTATATCGTGGT
                                   ttataac  putative branch site (score: 2)
                                         ccttattc  CT-rich tract
                                  tttataaccttatt  TA-rich tract