Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaagtttagacagcaaatacataaaaactgtgtaaaacattagaaattcttcctttatatctttttttcctgacagaataattcttttatatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGATCACCGGAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGA

Basic information

species Glycine max
transcript GLYMA16G08090.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
gaaagtttagacagcaaatacataaaaactgtgtaaa--acattagaaattcttcctttatatctttttttcctgacagaataattcttttatatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGATCACCGGAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGA
    |  |  |       |  || |      | | |   ||| |    ||   |  | | | |  | | ||  ||  | ||   ||  | | |  ||   ||||||  || || || ||||| |||| |||||| ||||| |||||||||||||||||  | |||||    ||  | ||| | |||||||||||||| ||||
ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgctaaaa--gttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA

upper sequence: GLYMA16G08090.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 3
gaaagtttagacagcaaatacataaaaactgtgtaaaacattagaaattcttcctttatatcttttt---------ttcctgacagaataattctttta--tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGATCACCGGAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGA
             |     |      || | |  ||     ||    ||||  |||||||  | ||           || |    |  |  |||||||   | | |  |||| ||  || || || |||||  | | |||||| || || |||||||||||||||||  | ||||| |||||||||||| |||| ||| ||||||| || |
-------------gtttggattcttgaatttttcaatgttctaagtgttctctctttatagatattaagatgaaagctcatagttgcttgcttctttttgtttttttttagGTTGCTGGTATCCCAAAGAAGTTGGCTCCAACAATCGGAATTTCTGTTGATCACCGACGCAAGAACCGTTCTTTGGAGGGTCTTCAGTCCAATGTCCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722147|gb|BW659338.1|BW659338
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|57575842|gb|CX548813.1|CX548813
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298197042|gb|HO041729.1|HO041729
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298188363|gb|HO035056.1|HO035056
EST:     ACAACATGAAAGTCGGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCGAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|58025292|gb|CX712033.1|CX712033
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|33387808|gb|CA851015.1|CA851015
EST:     ATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGNAAACTTGGTCCAACTATTGGGATTTCTGTTGA
genomic: ATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAG-AAACTTGGTCCAACTATTGGGATTTCTGTTGA
EST: gi|298167525|gb|HO012788.1|HO012788
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298191600|gb|HO039079.1|HO039079
EST:     ACAACATGAAAGTCAGATCTGGGGGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|14011765|gb|BG726687.1|BG726687
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|17152850|gb|BM142783.1|BM142783
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|4289624|gb|AI441502.1|AI441502
EST:     CAACATGAAAGNTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTA
genomic: CAACATGAAAG-TCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTA
EST: gi|42722905|gb|CK768804.1|CK768804
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|11688003|gb|BF595679.1|BF595679
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192333930|gb|FK024743.1|FK024743
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|19936920|gb|BQ081066.1|BQ081066
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298174143|gb|HO017479.1|HO017479
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|58018618|gb|CX705360.1|CX705360
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192323376|gb|FK017077.1|FK017077
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298182976|gb|HO028239.1|HO028239
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192332197|gb|FK023846.1|FK023846
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|11411696|gb|BF423766.1|BF423766
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|22931546|gb|BU548685.1|BU548685
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192311408|gb|FK003501.1|FK003501
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298176355|gb|HO023056.1|HO023056
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|7028119|gb|AW457902.1|AW457902
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298180531|gb|HO025618.1|HO025618
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCCCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|209722700|gb|BW657954.1|BW657954
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATT-CCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298177413|gb|HO027194.1|HO027194
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192333931|gb|FK024744.1|FK024744
EST:     GGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: GGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192311409|gb|FK003502.1|FK003502
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|19934368|gb|BQ079398.1|BQ079398
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298172584|gb|HO019624.1|HO019624
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192297096|gb|FG988192.1|FG988192
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192306965|gb|FK002659.1|FK002659
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGACTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|151409204|gb|EV279012.1|EV279012
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|33388395|gb|CA851602.1|CA851602
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|31471465|gb|CD413493.1|CD413493
EST:     GGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: GGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298170959|gb|HO015935.1|HO015935
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|17153985|gb|BM143918.1|BM143918
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192332787|gb|FK026788.1|FK026788
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|151397933|gb|EV267806.1|EV267806
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|7232255|gb|AW567612.1|AW567612
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|298185148|gb|HO030361.1|HO030361
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|58024020|gb|CX710761.1|CX710761
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|58018052|gb|CX704794.1|CX704794
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|16997107|gb|BM086479.1|BM086479
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|7924930|gb|AW830956.1|AW830956
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGCGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
EST: gi|192299168|gb|FG992899.1|FG992899
EST:     ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAG                         GCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGATCTGGGAGAGGATTTTCTCTCGAAGAGTTGAAGgtaaaattac ... tatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcttcctttatatctttttttcctgacagaataattcttttatatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGATCACCGGAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGA
                       tcctgac  putative branch site (score: 2)
                                     ttcttttat  putative PPT
                            acagaataattctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaaagtttagacagcaaatacataaaaactgtgtaaaacattagaaattcttcctttatatctttttttcctgacagaataattcttttatatatcctagGCTGTGGGAATTCCCAAGAAACTTGGTCCAACTATTGGGATTTCTGTTGATCACCGGAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
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- - - - - - - - - - - - - - ctgtgta