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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttgcatccttttcagtattccttagccttatttttcacattctatatgcttctgcatatatttattctctaatttctcctatggcagTCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATACGAGAATGTGACACTCTGTGCCTTGTTTTTGAGTACATG

Basic information

species Glycine max
transcript GLYMA16G08080.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193493138|gb|FK463024.1|FK463024
EST:     AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATA
genomic: AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgtgttgcatc ... cctatggcagTCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATA
EST: gi|10237923|gb|BE806811.1|BE806811
EST:     AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATA
genomic: AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgtgttgcatc ... cctatggcagTCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATA
EST: gi|10237927|gb|BE806815.1|BE806815
EST:     AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATA
genomic: AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgtgttgcatc ... cctatggcagTCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATA
EST: gi|105632161|gb|DW246338.1|DW246338
EST:     AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATA
genomic: AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgtgttgcatc ... cctatggcagTCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATA
EST: gi|207698243|gb|GD679628.1|GD679628
EST:     AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAG                         TCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTG
genomic: AAAAGAAATATTACTCTTGGGAGGAGTGTGTAAACCTGAGAGAAGTCAAGgtgttgcatc ... cctatggcagTCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacattctatatgcttctgcatatatttattctctaatttctcctatggcagTCATTACGGAAAATGAATCATGCAAATATTGTGAAGCTGAAGGAAGTTATACGAGAATGTGACACTCTGTGCCTTGTTTTTGAGTACATG
                                  ctctaat  putative branch site (score: 3)
                                ttctctaatttctcct  CT-rich tract
                       atatatttattctcta  TA-rich tract