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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttagattttttatagatctctgcaagattctaatcattaggtttcatctcataaagtgttaaattgcttgtgtttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTGCTGGAGCTGTTGCCAAATCAACTGCTTAAAGGATCTCCCATTTCTAGGT

Basic information

species Glycine max
transcript GLYMA16G07870.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403644|gb|BE059278.1|BE059278
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192328112|gb|FK022836.1|FK022836
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|151401427|gb|EV271241.1|EV271241
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|208162316|gb|GD962207.1|GD962207
EST:     TTTATTGGTGGAAACCACATTTGGTTGGTCTGTGACT                         CAGCAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCT
genomic: TTTATTGGTGGAAACCACA-TTGG-TGG-CTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCT
EST: gi|151413203|gb|EV283011.1|EV283011
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|6341950|gb|AW164774.1|AW164774
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193413980|gb|FK376574.1|FK376574
EST:     TGCCTAATGTGTTTTATTTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: TGCCTAATGTG-TTTA-TTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|7639978|gb|AW734289.1|AW734289
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAAGGGAAGCTGGGTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254344865|gb|GR851348.1|GR851348
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACACCTGCCCTGCACACTCAGGGGAAGCCGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|7639903|gb|AW734215.1|AW734215
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|41146455|gb|CK606666.1|CK606666
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|27427244|gb|CA938764.1|CA938764
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|19348850|gb|BM893382.1|BM893382
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|21889118|gb|BQ742331.1|BQ742331
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193485310|gb|FK450756.1|FK450756
EST:     ACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: ACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|5666636|gb|AI930672.1|AI930672
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254322008|gb|GR837422.1|GR837422
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193590556|gb|FK545021.1|FK545021
EST:     GCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: GCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193613517|gb|FK563197.1|FK563197
EST:     GTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: GTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|208335934|gb|GE138485.1|GE138485
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|151402956|gb|EV272769.1|EV272769
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCGCACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|19269552|gb|BM885808.1|BM885808
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|8285455|gb|BE023014.1|BE023014
EST:     ACCCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192321829|gb|FK013655.1|FK013655
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|120491733|gb|EH219900.1|EH219900
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192307463|gb|FK002009.1|FK002009
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192332075|gb|FK024563.1|FK024563
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254343938|gb|GR857694.1|GR857694
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|209724925|gb|BW669615.1|BW669615
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|298174480|gb|HO014625.1|HO014625
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254344692|gb|GR851282.1|GR851282
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|151412923|gb|EV282735.1|EV282735
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192325119|gb|FK019065.1|FK019065
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192302984|gb|FG997000.1|FG997000
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGGTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGAT
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGAT
EST: gi|192328113|gb|FK022837.1|FK022837
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|58023484|gb|CX710225.1|CX710225
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192307462|gb|FK002008.1|FK002008
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|8285237|gb|BE022796.1|BE022796
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|7146434|gb|AW508356.1|AW508356
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193661915|gb|FK606061.1|FK606061
EST:     GTGGCTGTGACTT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCT
genomic: GTGGCTGTGAC-Tgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCT
EST: gi|209723431|gb|BW651359.1|BW651359
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192295987|gb|FG989395.1|FG989395
EST:     ATCCGTGCCTAATGTGTTTATTGGCGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACGCTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|6454439|gb|AW185122.1|AW185122
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|207777094|gb|GD750079.1|GD750079
EST:     TGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: TGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193398066|gb|FK361188.1|FK361188
EST:     CACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACGCTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: CACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254341570|gb|GR852707.1|GR852707
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|298190069|gb|HO032190.1|HO032190
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|7234934|gb|AW570266.1|AW570266
EST:     AACCGTGCCTAATGTGTGTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|15284915|gb|BI468806.1|BI468806
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192325652|gb|FK019508.1|FK019508
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193471856|gb|FK434857.1|FK434857
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254327162|gb|GR836771.1|GR836771
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|298195279|gb|HO043807.1|HO043807
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254347516|gb|GR853765.1|GR853765
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|208255728|gb|GE056151.1|GE056151
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254344864|gb|GR851347.1|GR851347
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|207780263|gb|GD752632.1|GD752632
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193579083|gb|FK535851.1|FK535851
EST:     CGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: CGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193365743|gb|FK330668.1|FK330668
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTACTGCTGATA
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCT-CTGCTGATA
EST: gi|298184359|gb|HO029572.1|HO029572
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|151399599|gb|EV269470.1|EV269470
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254317865|gb|GR832033.1|GR832033
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|6726837|gb|AW311256.1|AW311256
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193618456|gb|FK572566.1|FK572566
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|193417206|gb|FK384620.1|FK384620
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|208163261|gb|GD965729.1|GD965729
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCA
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCA
EST: gi|12496611|gb|BG047151.1|BG047151
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|209724924|gb|BW669614.1|BW669614
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|17022936|gb|BM093970.1|BM093970
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|254346010|gb|GR859657.1|GR859657
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|298177177|gb|HO027072.1|HO027072
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192325734|gb|FK015091.1|FK015091
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192312685|gb|FK004373.1|FK004373
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192322967|gb|FK016698.1|FK016698
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|120491756|gb|EH219923.1|EH219923
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCCCATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|192314393|gb|FK008391.1|FK008391
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|207748705|gb|GD721312.1|GD721312
EST:     CATTGGTGGCTGTTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCT
genomic: CATTGGTGGCTG-TGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCT
EST: gi|298175737|gb|HO018334.1|HO018334
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|10845704|gb|BF068766.1|BF068766
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
EST: gi|18710746|gb|BM522534.1|BM522534
EST:     AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACT                         CAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG
genomic: AACCGTGCCTAATGTGTTTATTGGTGGAAACCACATTGGTGGCTGTGACTgtaagattta ... ttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctaatcattaggtttcatctcataaagtgttaaattgcttgtgtttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTGCTGGAGCTGTTGCCAAATCAACTGCTTAAAGGATCTCCCATTTCTAGGT
 ttctaat  putative branch site (score: 2)
                                          tgtttct  putative PPT
                      ataaagtgttaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagatttagattttttatagatctctgcaagattctaatcattaggtttcatctcataaagtgttaaattgcttgtgtttctatgcagCAACAACTGCCCTGCACACTCAGGGGAAGCTGGTTCCTCTGCTGATATCTGCTGGAGCTGTTGCCAAATCAACTGCTTAAAGGATCTCCCATTTCTAGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT