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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatgatatgtatttctctagttgagaatgttgttcttttttgttctgtggactgaattctcgattttgctgaacttagtgattgttttgttgtagCGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCATGGCTTGTTGCAGCAGTTTGTTTCTTTATTGCTTTGCCGAATAATTCCT

Basic information

species Glycine max
transcript GLYMA16G07110.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294741|gb|FG986590.1|FG986590
EST:     ATGCTGTTCTACTGACAGTAATTACATTGTTCCAGATTGCAATCTATGAA                         CGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
genomic: ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAAgtaagcatga ... tttgttgtagCGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
EST: gi|192313595|gb|FK005591.1|FK005591
EST:     ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAA                         CGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTTCA
genomic: ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAAgtaagcatga ... tttgttgtagCGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
EST: gi|298197220|gb|HO041963.1|HO041963
EST:     ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAA                         CGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTTTTGCA
genomic: ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAAgtaagcatga ... tttgttgtagCGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
EST: gi|151401800|gb|EV271613.1|EV271613
EST:     ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAA                         CGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
genomic: ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAAgtaagcatga ... tttgttgtagCGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
EST: gi|192306919|gb|FG999952.1|FG999952
EST:     ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAA                         CGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
genomic: ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAAgtaagcatga ... tttgttgtagCGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
EST: gi|7327013|gb|AW620811.1|AW620811
EST:     ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAA                         CGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
genomic: ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAAgtaagcatga ... tttgttgtagCGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA
EST: gi|192313596|gb|FK005592.1|FK005592
EST:     ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAA                         CGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTTCA
genomic: ATGCTGTTCTACTGACAGCAATTACATTGTTCCAGATTGCAATCTATGAAgtaagcatga ... tttgttgtagCGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctgtggactgaattctcgattttgctgaacttagtgattgttttgttgtagCGTGGGAGTCAGAAAGTGTCCAAGGTTTCTATTGGAATTGTCTCTGTTGCATGGCTTGTTGCAGCAGTTTGTTTCTTTATTGCTTTGCCGAATAATTCCT
                                         ttgtttt  CT-rich tract
                                        attgtttt  TA-rich tract