1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ctgttttattgtatacttcatcctatcatattagttcatgtattctattgatatatgtttgaactgtttgtaagcctaacatatatgacttgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG
species | Glycine max |
transcript | GLYMA16G06850.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|21637841|gb|BM107996.1|BM107996
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTANEST: gi|192310375|gb|FK002255.1|FK002255
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAG-AAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAG
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|33390099|gb|CA853306.1|CA853306
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|11273943|gb|BF324331.1|BF324331
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|16348194|gb|BI973789.1|BI973789
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|254331186|gb|GR843305.1|GR843305
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: GCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|19453077|gb|BM954487.1|BM954487
genomic: GCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|9986040|gb|BE660148.1|BE660148
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|213607767|gb|DB959106.1|DB959106
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|213608230|gb|DB970827.1|DB970827
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|37995559|gb|CF807148.1|CF807148
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAEST: gi|15663680|gb|BI701051.1|BI701051
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
EST: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGG CTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
genomic: TATGCAAGGACAAAAATCTCTGATGATGAATTGAGAAACCGGTTGCGCGGgtgagacttt ... tgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGA
tattgatatatgtttgaactgtttgtaagcctaacatatatgacttgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG
atatatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttttattgtatacttcatcctatcatattagttcatgtattctattgatatatgtttgaactgtttgtaagcctaacatatatgacttgatgtgcagCTATCTTGTTCCAAAGAAAGGTGCTTCCCCCCAACAGTTGGAGGATGTAGAGAAGTTTTTACAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG