Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatatctgttggaattgttgtctattttttattttatttttggtcagcaacttgtttcttattgtagtagttttttttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG

Basic information

species Glycine max
transcript GLYMA16G05530.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05530.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067476_T01 (Zea mays), 3'ss of exon 3
----gttaatatctgttggaattgttgtctatttttta----ttttatttttggtcagcaacttgtttcttattgtagtagt-tttttttcctatt--agGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG
      |   |    |||  | |||     ||||  ||    || |  | |||  || |     || | |   |  |  | |  ||| | | | ||  |||||||||| ||||||||||| || ||  ||||  ||||  |||| |||||||| ||||||||||||||||||
tccgacttgaaaacattgctactgtacataatttagtagtgtttcttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGG

upper sequence: GLYMA16G05530.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G067476_T02 (Zea mays), 3'ss of exon 3
----gttaatatctgttggaattgttgtctatttttta----ttttatttttggtcagcaacttgtttcttattgtagtagt-tttttttcctatt--agGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG----
      |   |    |||  | |||     ||||  ||    || |  | |||  || |     || | |   |  |  | |  ||| | | | ||  |||||||||| ||||||||||| || ||  ||||  ||||  |||| |||||||| ||||||||||||||||||    
tccgacttgaaaacattgctactgtacataatttagtagtgtttcttgtattgtccaacccacggtgtttcgctaaatcaatgctttgtacatgttgaagGAGGCATACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACCTCCAGAGAAGAAGTTTGAATGGGTAA

upper sequence: GLYMA16G05530.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G376727_T05 (Zea mays), 3'ss of exon 3
-------------------------------------------------------gttaatatctgttggaattgttgtctattttttattttatttttggtcagcaacttgtttcttattg----tagtagttttttttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG
                                                       |||| ||  | ||| | |       |||||||||  |   | ||| |  ||   | || | |  ||     || |  ||| | |   |   ||||||| || ||||||||||| || ||  ||||  ||||  |||| |||| ||||||||||||||||||||||
gtcccccccccccccccccccgacctctactatacataattttagtgtttcttatgtta-tacatcttgtattatcctcttattttttacatcgctattgcttggcccatggtatttagttaaatctaatgttttgtatctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGG

upper sequence: GLYMA16G05530.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G376727_T03 (Zea mays), 3'ss of exon 3
-------------------------------------------------------gttaatatctgttggaattgttgtctattttttattttatttttggtcagcaacttgtttcttattg----tagtagttttttttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG----
                                                       |||| ||  | ||| | |       |||||||||  |   | ||| |  ||   | || | |  ||     || |  ||| | |   |   ||||||| || ||||||||||| || ||  ||||  ||||  |||| |||| ||||||||||||||||||||||    
gtcccccccccccccccccccgacctctactatacataattttagtgtttcttatgtta-tacatcttgtattatcctcttattttttacatcgctattgcttggcccatggtatttagttaaatctaatgttttgtatctgttcaagGAGGCCTACTCAACTCCCATCTTCCCACTGGATATTCTCGCTGAGAGACTTCCTGAGAAGAAGTTTGAATGGGTAA

upper sequence: GLYMA16G05530.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0068g01370.t01 (Vitis vinifera), 3'ss of exon 3
-gttaatatctgttggaattgttgtctattttttattttatttttggtcagcaacttgtttcttattgtagtagttttttttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG
  || | || | ||  | || |  | | ||| |  ||| ||     || |  || || |    | |||    | ||||   |  | ||||||||||||||||||||| ||||| ||||| ||  | ||| | |  |||||||| |||||||||||||| |||
gtttgacatttttt--atttatgatttgtttctcgtttcat-----gtgaagaatttctaatctcttg----acttttgcctgtttttagGAGGCATATTCAACTCCAATATTACCTTTAGATATCCTTGCAGTGAGACCTCCAGAGAAGAAGTTTGAGTGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37995718|gb|CF807307.1|CF807307
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|192309917|gb|FK001461.1|FK001461
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|58019764|gb|CX706506.1|CX706506
EST:     GTGAACCTGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|12772421|gb|BG237348.1|BG237348
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|151408820|gb|EV278628.1|EV278628
EST:     TGAACCAGCTGTCATAAAGTTCCGTGTTCCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: TGAACCAGCTGTCATAAAGTTCCGTGTT-CCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|13791399|gb|BG653990.1|BG653990
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|31465373|gb|CD407401.1|CD407401
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACNAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|213617119|gb|DB963592.1|DB963592
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|17401673|gb|BM178455.1|BM178455
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|192328456|gb|FK020730.1|FK020730
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|4299243|gb|AI442876.1|AI442876
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|6914631|gb|AW396153.1|AW396153
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|26056181|gb|CA799095.1|CA799095
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAAACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|14991791|gb|BI317464.1|BI317464
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|192310732|gb|FK001156.1|FK001156
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|7589987|gb|AW705750.1|AW705750
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|254347231|gb|GR853480.1|GR853480
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|254347232|gb|GR853481.1|GR853481
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|254344547|gb|GR855418.1|GR855418
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|7588956|gb|AW704740.1|AW704740
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAAGCATATTCAACTCCCATATTGGCCTT-GGACGTTCTTTCTGATAGACC
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTG-CCTTTGGACGTTCTTTCTGATAGACC
EST: gi|19269510|gb|BM885766.1|BM885766
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|19269735|gb|BM885991.1|BM885991
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|31456205|gb|CD398233.1|CD398233
EST:     GTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|192326907|gb|FK019199.1|FK019199
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|7925531|gb|AW831557.1|AW831557
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|19268686|gb|BM884942.1|BM884942
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|151410082|gb|EV279890.1|EV279890
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGCTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|208317318|gb|GE117499.1|GE117499
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|192296517|gb|FG989838.1|FG989838
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|7041985|gb|AW471879.1|AW471879
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|17020635|gb|BM091669.1|BM091669
EST:     GAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|192294092|gb|FG986181.1|FG986181
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|21285290|gb|BQ473161.1|BQ473161
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|58019284|gb|CX706026.1|CX706026
EST:     GTGAACCTGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|16997127|gb|BM086499.1|BM086499
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|23064011|gb|BU578784.1|BU578784
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|21994234|gb|BQ785762.1|BQ785762
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|57574562|gb|CX547537.1|CX547537
EST:     GTGAACCTGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|7286236|gb|AW598723.1|AW598723
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|31561271|gb|CD487109.1|CD487109
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|254345416|gb|GR855859.1|GR855859
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|31460384|gb|CD402352.1|CD402352
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|9439886|gb|BE440398.1|BE440398
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|11688866|gb|BF596542.1|BF596542
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|10710516|gb|BF010234.1|BF010234
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|193616477|gb|FK566989.1|FK566989
EST:     ACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTTGTTTCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACC
genomic: ACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCT-G---CTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACC
EST: gi|151403836|gb|EV273646.1|EV273646
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
EST: gi|20814723|gb|BQ299201.1|BQ299201
EST:     GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAG                         GAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT
genomic: GTGAACCAGCTGTCATAAAGTTCCGTGTTCCCACAAAGTCTGCTTTGCAGgttaatatct ... ttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttatttttggtcagcaacttgtttcttattgtagtagttttttttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG
                                       ttttttttcctatt  CT-rich tract
                                       ttttttttcctatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttaatatctgttggaattgttgtctattttttattttatttttggtcagcaacttgtttcttattgtagtagttttttttcctattagGAGGCATATTCAACTCCCATATTGCCTTTGGACGTTCTTTCTGATAGACCTCCTGAGAAGAAGTTTGAATGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT