1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctaaagtttttggtgtttaaattttgagctcaccaatcattaactgtagaccatctcgagttttggctttgatgtatagtctttcttgtttcataccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCTTGGATTCCGCGGGCTTCCATGGTATGATGTGATTGGAATGCTTGATAA
species | Glycine max |
transcript | GLYMA16G05390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAG CAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCEST: gi|24206318|gb|BU965571.1|BU965571
genomic: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGgtataattct ... ttcataccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTC
EST: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAG CAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCEST: gi|31311412|gb|CD396615.1|CD396615
genomic: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGgtataattct ... ttcataccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTC
EST: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAG CAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCEST: gi|209715862|gb|BW674421.1|BW674421
genomic: CTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCCGAGgtataattct ... ttcataccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTC
EST: AGATGTGTTCAAAGCCGAG CAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTC
genomic: AGATGTGTTCAAAGCCGAGgtataattct ... ttcataccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTC
tgtagaccatctcgagttttggctttgatgtatagtctttcttgtttcataccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCTTGGATTCCGCGGGCTTCCATGGTATGATGTGATTGGAATGCTTGATAA
ctttgat putative branch site (score: 5)
tctttcttgtttcat putative PPT
atgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaaagtttttggtgtttaaattttgagctcaccaatcattaactgtagaccatctcgagttttggctttgatgtatagtctttcttgtttcataccagCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAGATTAAAGCGGTGCTCTTGGATTCCGCGGGCTTCCATGGTATGATGTGATTGGAATGCTTGATAA
- - - - -tttggtg
- - - - - - - - - - - - - - - - -ccaatca
- - - - - - - - - - - - - - - - - - - - - - - - - -ccatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggctttg