Sequence
atgc intronic sequence ATGC exonic sequencegtatgtctctttctgccttgtgaatcctgagttctgagcactcttatttgattcaatttccattaattgcaaattgctgatttttttttttttggtttatttttcaatgtgtcaatgattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG
Basic information
species | Glycine max |
transcript | GLYMA16G05340.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G05340.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G119791_T03 (Zea mays), 3'ss of exon 3
gtatgtctctttctgccttgtgaatcctgagttctgagcactcttat--ttgattcaatttccattaattgcaaattgctgatttt--tttttttttggtttatttttcaatgtgtcaatgattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG----------------------
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------------------------gtcagtattcctcccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattct-tgagctttt--ttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGGTTAGTACATTCTTCTAGACTA
upper sequence: GLYMA16G05340.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G119791_T02 (Zea mays), 3'ss of exon 3
gtatgtctctttctgccttgtgaatcctgagttctgagcactcttat--ttgattcaatttccattaattgcaaattgctgattt--ttttttttttggtttatttttcaatgtgtcaatgattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG
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------------------------gtcagtattcctcccatttttatggtcaatggatgctattcctcatccagaatcatgatttaaatattcatctgagatgatattct-tgagctttt--ttgcagTATAATGCTCAGTTCAAGATTTTTGAACCTCTAGAATACAAATATGATGTCTGTGAAACTATCCTATTGTGGGAACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207811864|gb|GD783113.1|GD783113EST: ACCATTGCAAATTAATCCTTAAATACCCTGAAGGTACCAACAGCACTTGG TACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTG
genomic: ACCATTGCAAATTAATCCTTAAATACCCTGAAGGTACCAACAGCACTTGGgtatgtctct ... atgattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaattgctgatttttttttttttggtttatttttcaatgtgtcaatgattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG
tgctgat putative branch site (score: 3)
tgattttttttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtctctttctgccttgtgaatcctgagttctgagcactcttatttgattcaatttccattaattgcaaattgctgatttttttttttttggtttatttttcaatgtgtcaatgattgcagTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG