1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttatttgtgaattttcttagcatttgttgttttcatatttttctttttattatataattccttgtttttacatttaagtgtttaacttttgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAATAGCTCAGAATGTTGACACAGGGGCCATATTAATGCAAGGTTTTGCCAA
species | Glycine max |
transcript | GLYMA16G05140.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG ACTCATTACTGGACAGTGTAAAATGGGEST: gi|19453447|gb|BM954857.1|BM954857
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGG
EST: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAAEST: gi|151409476|gb|EV279284.1|EV279284
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAAEST: gi|6747878|gb|AW318334.1|AW318334
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: GAGCCACCGTNTAGTTTTTGCTTCTATGCACACACCACAACCTAAGGTAG ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAAEST: gi|209701860|gb|BW664565.1|BW664565
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAAEST: gi|23056166|gb|BU577706.1|BU577706
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: TTCTATGCACACACCAGAACCTAAGGTAG ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAAEST: gi|17400397|gb|BM177179.1|BM177179
genomic: TTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
EST: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAG ACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
genomic: GAGCCACCGTTTAGTTTTTGCTTCTATGCACACACCAGAACCTAAGGTAGgtacttttgt ... tgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAA
ttttattatataattccttgtttttacatttaagtgtttaacttttgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAATAGCTCAGAATGTTGACACAGGGGCCATATTAATGCAAGGTTTTGCCAA
gtttaac putative branch site (score: 3)
cttttgtc CT-rich tract
ttatataattccttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttgtgaattttcttagcatttgttgttttcatatttttctttttattatataattccttgtttttacatttaagtgtttaacttttgtcaggtagACTCATTACTGGACAGTGTAAAATGGGATACCAAAGGTTTGGTTGTGGCAATAGCTCAGAATGTTGACACAGGGGCCATATTAATGCAAGGTTTTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccttg