1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttactaaaactagaagaataatatttattggttaaaaggaaataaaaaaaagaacttgtgagatgtttaaggagaaagatttgatgttggggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAATTCCCATTCGACCAGCCAATGAAGATCTACAACAGTTTG
species | Glycine max |
transcript | GLYMA16G04950.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGAAAGAATACAACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|24136885|gb|BU927395.1|BU927395
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|193401127|gb|FK370126.1|FK370126
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|19053688|gb|BM732355.1|BM732355
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|14126334|gb|BG790772.1|BG790772
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGACCTGCCAATCAAGGTGEST: gi|19269784|gb|BM886040.1|BM886040
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTG
EST: ACGANAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAAGTGCCAATCANGGTGTTCAAGATCAGCAAGGACTTEST: gi|16346473|gb|BI972077.1|BI972077
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|193431003|gb|FK398191.1|FK398191
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|11412008|gb|BF424019.1|BF424019
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGAATGT GTTCTTTGTGGACGAAGTGCCAATCAAGGTGTTCAAGAACAGCAAAGAACTEST: gi|193337807|gb|FK302118.1|FK302118
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGA-CT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|16996918|gb|BM086290.1|BM086290
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|10239027|gb|BE807915.1|BE807915
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCATGGTGTTCAAGAACAGCAAGGACTTEST: gi|15813096|gb|BI785371.1|BI785371
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|6566722|gb|AW234354.1|AW234354
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAAATCAGG-TGTTCAAGAACAGCAAGGACCEST: gi|192327271|gb|FK019548.1|FK019548
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAA-TCAGGGTGTTCAAGAACAGCAAGGAC-
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|6726859|gb|AW311278.1|AW311278
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCATGGTGTTCAAGAACAGCAAGGACTTEST: gi|16996796|gb|BM086178.1|BM086178
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|17022538|gb|BM093572.1|BM093572
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|21678471|gb|BQ630822.1|BQ630822
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|6725347|gb|AW309746.1|AW309746
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|5770394|gb|AI973568.1|AI973568
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCANGGTGTTCAAGAACAGCAAGGACTTEST: gi|18732892|gb|BM527308.1|BM527308
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTEST: gi|9258985|gb|BE347132.1|BE347132
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTGEST: gi|9259378|gb|BE347525.1|BE347525
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTT
EST: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGT GTTCTTTGTGGACGAGGTGCCAATCANGGTGTTCAAGAAACAGCA-GGACT
genomic: ACGAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacac ... ggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAA-CAGCAAGGACT
aaaaaagaacttgtgagatgtttaaggagaaagatttgatgttggggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAATTCCCATTCGACCAGCCAATGAAGATCTACAACAGTTTG
atttgat putative branch site (score: 5)
atgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttactaaaactagaagaataatatttattggttaaaaggaaataaaaaaaagaacttgtgagatgtttaaggagaaagatttgatgttggggatgtgcagGTTCTTTGTGGACGAGGTGCCAATCAGGGTGTTCAAGAACAGCAAGGACTTGGGAGTGAAATTCCCATTCGACCAGCCAATGAAGATCTACAACAGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA